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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0568 [new locus tag: SAUSA300_RS03040 ]
  • pan locus tag?: SAUPAN002364000
  • symbol: SAUSA300_0568
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0568 [new locus tag: SAUSA300_RS03040 ]
  • symbol: SAUSA300_0568
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 642046..642696
  • length: 651
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGACACGTATTGCAAAAAAACTTGGTTACAGTGAAAGTAACAGCTTTGTTACAAACACT
    GTCATCCAGTTTACGTTACATTCGGAATCGTTTCCTAGAATATTTAGAATTACCTCTCGA
    GATACAAACTTAATAAAAATTTCTCAAGCTAATAAAATTTCGCGTCAAATTACAAACAAT
    GAAATTTCTTTAGCCGAAGCAAAAACGCAACTTGAAAAAATATATGTTGCTAAGCGTGAC
    AGCAGTCTTCCCTTTAAAGGTTTTGCTGCAGCAATGATTGCAATGAGTTTCTTATATTTA
    CAAGGTGGTAGATTGATTGATGTTTTAACTGCGATATTAGCAGGTAGTCTAGGATACCTA
    GTCACTGAGATTTTAGATCGTAAGTTACACGCACAGTTTATCCCAGAATTCATTGGTTCA
    TTAGTTATTGGGATTATCGCCGTTATTGGACATACACTTATTCCAACAGGTGACTTGGCA
    ACTATTATCATTGCGGCAGTCATGCCTATTGTTCCTGGTGTATTAATAACAAACGCAATA
    CAAGATTTATTTGGTGGACACATGTTGATGTTCACAACGAAATCATTAGAAGCATTGGTT
    ACTGCGTTTGGCATCGGTGCTGGCGTTGGTAGCGTATTAATTTTAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    651


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0568 [new locus tag: SAUSA300_RS03040 ]
  • symbol: SAUSA300_0568
  • description: hypothetical protein
  • length: 216
  • theoretical pI: 9.97544
  • theoretical MW: 23307.4
  • GRAVY: 0.616667

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107863: hypothetical protein
  • PFAM:
    ThrE (CL0470) ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 182.7)
    and 4 more
    ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 35.6)
    no clan defined TMEM171; Transmembrane protein family 171 (PF15471; HMM-score: 11.3)
    DUF5455; Family of unknown function (DUF5455) (PF17537; HMM-score: 10.5)
    RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 7.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0012
    • Cytoplasmic Membrane Score: 0.9967
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.002
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005842
    • TAT(Tat/SPI): 0.00057
    • LIPO(Sec/SPII): 0.00059
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTRIAKKLGYSESNSFVTNTVIQFTLHSESFPRIFRITSRDTNLIKISQANKISRQITNNEISLAEAKTQLEKIYVAKRDSSLPFKGFAAAMIAMSFLYLQGGRLIDVLTAILAGSLGYLVTEILDRKLHAQFIPEFIGSLVIGIIAVIGHTLIPTGDLATIIIAAVMPIVPGVLITNAIQDLFGGHMLMFTTKSLEALVTAFGIGAGVGSVLILV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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