Jump to navigation
Jump to search
NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0595
- pan locus tag?: SAUPAN002516000
- symbol: tagB
- pan gene symbol?: tagB
- synonym:
- product: teichoic acid biosynthesis protein B
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0595
- symbol: tagB
- product: teichoic acid biosynthesis protein B
- replicon: chromosome
- strand: +
- coordinates: 688582..689052
- length: 471
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1123401 NCBI
- RefSeq: NP_373849 NCBI
- BioCyc:
- MicrobesOnline: 102875 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421TTGGTATTATATGTACCAACATATAGAGAAGATAAAGCAGATAATAGGGCTATTGATAAA
GCTTATTTTGAAAAATGTTTACCAGGATATACACTGATTAATAAATTACATCCATCAATT
GAAGATTCAGACATTGATGACGTATCTTCAATCGACACGTCTACATTAATGCTAATGTCA
GATATAATTATTAGCGACTATAGTTCGCTGCCAATAGAAGCTAGCTTGTTAGATATTCCA
ACTATATTTTATGTGTATGATGAAGGAACATATGATAAAGTGAGAGGCCTGAATCAATTT
TACAAAGCAATACCGGATAGCTACAAAGTGTATACTGAAGAAGATTTAATAATGACGATA
CAAGAAAAAGAACATCTATTAAGTCCGTTATTTAAAGATTGGCATAAGTATAATACTGAT
AAAAGTTTACATCAGCTCACAGAATATATAGATAAGATGGTGACAAAATGA60
120
180
240
300
360
420
471
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0595
- symbol: TagB
- description: teichoic acid biosynthesis protein B
- length: 156
- theoretical pI: 4.38236
- theoretical MW: 18212.6
- GRAVY: -0.371154
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides surface carbohydrate biosynthesis protein (TIGR04396; HMM-score: 13.7)
- TheSEED :
- CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase
- PFAM: GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 71.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005465
- TAT(Tat/SPI): 0.000169
- LIPO(Sec/SPII): 0.000992
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MVLYVPTYREDKADNRAIDKAYFEKCLPGYTLINKLHPSIEDSDIDDVSSIDTSTLMLMSDIIISDYSSLPIEASLLDIPTIFYVYDEGTYDKVRGLNQFYKAIPDSYKVYTEEDLIMTIQEKEHLLSPLFKDWHKYNTDKSLHQLTEYIDKMVTK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.