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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0704 [new locus tag: SA_RS04005 ]
  • pan locus tag?: SAUPAN002657000
  • symbol: SA0704
  • pan gene symbol?: fakB1
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0704 [new locus tag: SA_RS04005 ]
  • symbol: SA0704
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 802385..803251
  • length: 867
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAAATTGCTGTGATGACCGATTCTACAAGTTATCTGTCGCAGGACTTAATCGATAAA
    TATAATATTCAAATAGCGCCATTAAGTGTGACTTTTGATGATGGAAAGAACTTTACAGAA
    AGTAATGAAATAGCAATTGAAGAATTTTATAATAAAATGGCATCGTCTCAAACGATTCCG
    ACAACAAGCCAACCAGCAATTGGCGAATGGATTACTAAATATGAAATGCTAAGAGATCAG
    GGTTACACAGATATCATTGTCATTTGCTTATCCAGTGGGATTAGTGGAAGTTATCAATCT
    AGTTATCAAGCAGGGGAAATGGTTGAAGGTGTTAATGTACATGCATTTGATAGTAAGCTT
    GCAGCAATGATTGAAGGATGTTATGTATTACGTGCTATTGAAATGGTTGAAGAAGGATAC
    GAACCACAGCAAATTATTGATGATTTAACTAATATGCGTGAGCACACAGGTGCATATTTA
    ATTGTTGATGACTTAAAGAATTTACAAAAAAGTGGTCGAATTACTGGTGCTCAAGCATGG
    GTTGGAACATTATTGAAAATGAAGCCAGTTCTTAAGTTTGAAGATGGCAAGATTATACCA
    GAAGAAAAAGTTCGTACTAAAAAGCGTGCCATTCAAACATTAGAAAAGAAAGTATTAGAT
    ATTGTAAAAGACTTTGAAGAAGTAACTTTATTTGTCATAAATGGAGATCATTTTGAAGAT
    GGTCAAGCGTTATACAAAAAGTTACAAGAAGATTGTCCTTCAGGTTATCAAGTAGCATAC
    TCTGAGTTTGGTCCAGTTGTTGCAGCACATTTAGGTTCTGGTGGATTAGGTTTAGGCTAT
    GTTGGCAGAAAAATAAGATTAACATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    867

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0704 [new locus tag: SA_RS04005 ]
  • symbol: SA0704
  • description: hypothetical protein
  • length: 288
  • theoretical pI: 4.63651
  • theoretical MW: 32068.4
  • GRAVY: -0.201736

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General EDD domain protein, DegV family (TIGR00762; HMM-score: 320.6)
  • TheSEED  :
    • FIG005590: DegV family protein
  • PFAM:
    EDD (CL0245) DegV; Uncharacterised protein, DegV family COG1307 (PF02645; HMM-score: 274)
    and 1 more
    OB (CL0021) DUF1344; Protein of unknown function (DUF1344) (PF07076; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009159
    • TAT(Tat/SPI): 0.000292
    • LIPO(Sec/SPII): 0.000829
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYLIVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALYKKLQEDCPSGYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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