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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0710 [new locus tag: SA_RS04045 ]
  • pan locus tag?: SAUPAN002669000
  • symbol: SA0710
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0710 [new locus tag: SA_RS04045 ]
  • symbol: SA0710
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 810776..811615
  • length: 840
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAAAAACTCTTACAGTGACGGTTTCGTCAGTGTTAGCTTTTTTAGCTTTAAATAAT
    GCAGCACATGCACAACAACATGGCACACAAGTAAAAACACCTGTTCAACATAACTATGTA
    TCAAATGTTCAAGCACAAACGCAATCACCGACAACTTATACAGTAGTTGCTGGCGATTCA
    TTATATAAGATTGCTTTAGAGCATCACTTAACGTTGAATCAATTATATTCATACAATCCT
    GGTGTAACACCTTTAATTTTTCCTGGTGACGTGATTTCACTTGTGCCTCAAAATAAAGTG
    AAACAAACTAAAGCGGTTAAATCACCAGTAAGAAAAGCAAGCCAAGCTAAAAAGGTAGTA
    AAACAACCTGTACAACAAGCGTCTAAAAAAGTAGTAGTTAAGCAAGCACCTAAGCAAGCA
    GTAGCTAAGACAGTTAATGTAGCATATAAACCTGCTCAAGTACAAAAATCAGTACCAACT
    GTACCTGTTGCACATAACTACAATAAATCAGTTGCTAACAGAGGAAACTTATATGCTTAT
    GGAAACTGCACATATTATGCCTTCGATCGTCGTGCACAATTAGGTAGAAGTATAGGAAGT
    TTATGGGGCAATGCAAATAACTGGAATTACGCAGCAAAAGTTGCAGGATTTAAAGTAGAT
    AAAACACCAGAAGTTGGCGCTATTTTCCAAACAGCTGCTGGCCCATATGGACATGTTGGT
    GTTGTTGAATCTGTAAACCCTAATGGAACAATTACTGTTTCGGAAATGAACTATGCTGGA
    TTTAATGTTAAATCTTCAAGAACAATTTTAAATCCAGGAAAATATAATTACATCCACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0710 [new locus tag: SA_RS04045 ]
  • symbol: SA0710
  • description: hypothetical protein
  • length: 279
  • theoretical pI: 10.557
  • theoretical MW: 30267.3
  • GRAVY: -0.294982

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination spore coat assembly protein SafA (TIGR02899; HMM-score: 18.5)
    and 1 more
    alternate signal-mediated exported protein, RER_14450 family (TIGR04089; HMM-score: 10.3)
  • TheSEED  :
    • Secretory antigen SsaA-like protein SAV0755
  • PFAM:
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 81.5)
    and 4 more
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 36)
    LysM_RLK; LysM domain (PF23577; HMM-score: 14.9)
    no clan defined AcnX; Aconitase X (PF04412; HMM-score: 13.3)
    TFIIA; Transcription factor IIA, alpha/beta subunit (PF03153; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.0003
    • Cell wall & surface Score: 0.0676
    • Extracellular Score: 0.932
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: -0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: NAAHAQQH
  • SignalP: Signal peptide SP(Sec/SPI) length 24 aa
    • SP(Sec/SPI): 0.9973
    • TAT(Tat/SPI): 0.00065
    • LIPO(Sec/SPII): 0.001121
    • Cleavage Site: CS pos: 24-25. AHA-QQ. Pr: 0.9792
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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