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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002669000
- symbol?: —
- synonym:
- description?: peptidase M23
- peptidase M23
- LysM domain-containing protein
- CHAP domain-containing protein
- N-acetylmuramoyl-L-alanine amidase Sle1 LysM/CHAP domain protein, putative
- LysM domain protein
- LysM family autolysin
- peptidoglycan hydrolysis related protein
- Secretory antigen
- secretory antigen ssaA2
- staphylococcal secretory antigen ssaA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3165290..3166129
- synteny block?: BlockID0019040
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0733 (lysM)
08BA02176:
C248_0842
11819-97:
MS7_0805
6850:
RSAU_000730
71193:
ST398NM01_0831
ECT-R 2:
ECTR2_705
ED133:
SAOV_0792
ED98:
SAAV_0718
HO 5096 0412:
SAEMRSA15_06810
JH1:
SaurJH1_0796
JH9:
SaurJH9_0779
JKD6008:
SAA6008_00770
JKD6159:
SAA6159_00710
LGA251:
SARLGA251_06880
M013:
M013TW_0742
MRSA252:
SAR0809
MSHR1132:
SAMSHR1132_07000
MSSA476:
SAS0720
Mu3:
SAHV_0752
Mu50:
SAV0755
MW2:
MW0717
RF122:
SAB0708
ST398:
SAPIG0831
T0131:
SAT0131_00827
TCH60:
HMPREF0772_12426
TW20:
SATW20_08300
USA300_TCH1516:
USA300HOU_0783
VC40:
SAVC_03410
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDS
N315 MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDS
NCTC8325 MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDS
Newman MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDS
USA300_FPR3757 MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDS
***:********************************************************
COL LYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVV
N315 LYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVV
NCTC8325 LYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVV
Newman LYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVV
USA300_FPR3757 LYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVV
************************************************************
COL KQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAY
N315 KQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAY
NCTC8325 KQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAY
Newman KQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAY
USA300_FPR3757 KQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAY
*********************:**************************************
COL GNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVG
N315 GNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVG
NCTC8325 GNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVG
Newman GNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVG
USA300_FPR3757 GNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVG
************************************************************
COL VVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
N315 VVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
NCTC8325 VVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
Newman VVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
USA300_FPR3757 VVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
***************************************