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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0860 [new locus tag: SA_RS04870 ]
  • pan locus tag?: SAUPAN003173000
  • symbol: SA0860
  • pan gene symbol?: yjbH
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0860 [new locus tag: SA_RS04870 ]
  • symbol: SA0860
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 975743..976528
  • length: 786
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGAAAATAAGAGTCGTGAAGATATTAATCTATCACCTGTAAGTAAAATCGAAATTTAT
    TCATTTTTCGATCCATTTAGCTCCGATTGCTTCAAATTATCAGCAATCTTATCCAAATTA
    AGAATTGAATATAATCAATATATACGTATCAGACATATATTAAATCCTTCGTTAAAAGTA
    TTAACGAAATGCCAAGCTCAAAGTACATCCAACTTTGATAACATCGCCCTAGCTTATAAA
    GCAGCTGAGTTACAAGGTCGTGTACGTGCCGAACGATTTATACATTTAATGCAAAATGAA
    ATCATACCTAAAAGAGATATTATTACAGAATCAATGATTTGTGACTGTATTCAAAATGCA
    GGTATTGATTTAGAAGTATTTAAAGACGACTTACAAAAAAGTAAACTAACCGAAAGCTTG
    AAAATTGATTTGCATATTGCAAGAGAAATGGAAATCGAACAAGCCCCTTCTCTCGTTTTC
    TTTAGTGAAGATGTTCATGAAGAAGGTTTAAAAGTCGAAGGATTATACCCATATCACATC
    TATACTTATATAATTAATGAATTGATGGGTAAACCTATCGAAAAGAATCTTCCTCCTAAA
    TTAGAAACTTATATACAGCAACAACAACTTGTAACGATGGAAGAATTACTTACTATTTAT
    GAATGGCCAGAAAAACTTTTAAACAAAGAGTTAAAGAAGTTAGCCATTCAACAAAAAATT
    GAAAAACTTAAATATCCAGACGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCA
    AAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    786

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0860 [new locus tag: SA_RS04870 ]
  • symbol: SA0860
  • description: hypothetical protein
  • length: 261
  • theoretical pI: 6.68061
  • theoretical MW: 30592.4
  • GRAVY: -0.390805

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • ClpXP adapter protein SpxH
    Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles CPO analysis  YjbH-like, GTP pyrophosphokinase domain
  • PFAM:
    Thioredoxin (CL0172) Thioredoxin_5; Thioredoxin (PF13743; HMM-score: 151.7)
    and 3 more
    DSBA; DSBA-like thioredoxin domain (PF01323; HMM-score: 18.4)
    Thioredoxin_2; Thioredoxin-like domain (PF13098; HMM-score: 14.4)
    Thioredoxin_4; Thioredoxin (PF13462; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004129
    • TAT(Tat/SPI): 0.00108
    • LIPO(Sec/SPII): 0.001468
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MENKSREDINLSPVSKIEIYSFFDPFSSDCFKLSAILSKLRIEYNQYIRIRHILNPSLKVLTKCQAQSTSNFDNIALAYKAAELQGRVRAERFIHLMQNEIIPKRDIITESMICDCIQNAGIDLEVFKDDLQKSKLTESLKIDLHIAREMEIEQAPSLVFFSEDVHEEGLKVEGLYPYHIYTYIINELMGKPIEKNLPPKLETYIQQQQLVTMEELLTIYEWPEKLLNKELKKLAIQQKIEKLKYPDGDFWKSKMPKIKSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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