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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0954 [new locus tag: SA_RS05400 ]
  • pan locus tag?: SAUPAN003327000
  • symbol: SA0954
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0954 [new locus tag: SA_RS05400 ]
  • symbol: SA0954
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1080713..1081732
  • length: 1020
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACTGGAGAACAATTTACTCAAATTAAACGTCCAGTAAGTAGATTAACTGAAAAAGTT
    CTAGGTTGGTTATGTTGGGTGATGTTATTAGTGCTTACTGTCATTACGATGTTTATAGCA
    CTTGTTTCATTCAGTAATAACACATCGATAGCTAATCTTGAAAATACATTAAACAATAAT
    GCATTTATCCAGCAATTATTAGCTGGAAATGGCTATAATACAACACAATTTGTAATATGG
    TTACAAAATGGTATATGGGCTATTATCGTTTACTTTATTGTTTGTTTGTTGATTTCATTT
    TTAGCTCTCATATCTATGAATATAAGAATCTTGTCAGGTTTCTTATTCTTAATATCAGCA
    ATTGTAACGATTCCTTTAGTTTTACTTATCGTTACTTTAATCATTCCGATATTATTCTTT
    ATTATTGCGATGATGCTATTTATAAGAAAAGATAAAGTTGAAATGGTTGCGCCACAATAT
    TATGAAGAGTATAACGGACCGATTTATGATTATCGTGAACCTGTGTATGAGCGCCCCCAA
    CCGAAAGATGATTATTATGATGTGCCTAAATATGAAAAAGAATTGGATAAATCAAATACT
    GTATATGATCAAGAACAGGAAAGAGATAAATATGATCAATTTCCTAAACGTGCAGTTGAA
    AGTGAATATAATCATGATGAGCGCACTGAGGAAGAACCATCAGTATTATCCAGACAGGCT
    AAATACAAACAAAAAAGTACTGAAGAACTAGGTATTGAAGATGATGGTTATTATGCAGAA
    CCTGAAGTTGATCCAAAAGAATTGAAAGCACAACAAAAGCGAGAAAAAGCTGAAATTAAA
    GCTAAGAAAAAAGAAAAACGTAAAGCTTATAACCAACGAATGAAAGAACGTAGGAAAAAT
    CAACCTAGCGCAGTTAGTCAACGTCGAATGAATTTTGAAGAGCGACGTCAAATTTACAAC
    AATGATATTTCTGAAGAACGCAATTCAAGTGAAGTTAAGGACAAAAAAGAGCAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0954 [new locus tag: SA_RS05400 ]
  • symbol: SA0954
  • description: hypothetical protein
  • length: 339
  • theoretical pI: 5.68472
  • theoretical MW: 40058.7
  • GRAVY: -0.50413

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108899: hypothetical protein
  • PFAM:
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 66)
    and 5 more
    no clan defined Choline_transpo; Plasma-membrane choline transporter (PF04515; HMM-score: 20.1)
    IncA; IncA protein (PF04156; HMM-score: 16.8)
    DUF975; Protein of unknown function (DUF975) (PF06161; HMM-score: 13.6)
    PHO4; Phosphate transporter family (PF01384; HMM-score: 12.3)
    Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016728
    • TAT(Tat/SPI): 0.000528
    • LIPO(Sec/SPII): 0.007393
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTGEQFTQIKRPVSRLTEKVLGWLCWVMLLVLTVITMFIALVSFSNNTSIANLENTLNNNAFIQQLLAGNGYNTTQFVIWLQNGIWAIIVYFIVCLLISFLALISMNIRILSGFLFLISAIVTIPLVLLIVTLIIPILFFIIAMMLFIRKDKVEMVAPQYYEEYNGPIYDYREPVYERPQPKDDYYDVPKYEKELDKSNTVYDQEQERDKYDQFPKRAVESEYNHDERTEEEPSVLSRQAKYKQKSTEELGIEDDGYYAEPEVDPKELKAQQKREKAEIKAKKKEKRKAYNQRMKERRKNQPSAVSQRRMNFEERRQIYNNDISEERNSSEVKDKKEQE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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