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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0984 [new locus tag: SA_RS05580 ]
  • pan locus tag?: SAUPAN003372000
  • symbol: SA0984
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0984 [new locus tag: SA_RS05580 ]
  • symbol: SA0984
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1113193..1113933
  • length: 741
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGAACAAATTACTTCTGCACAAAATAATAGAATTAAACAAGCGAACAAGCTAAAAAAG
    AAACGTGAGAGGGATAAAACTGGATTAGCTTTAATTGAAGGTGTGCATTTAATTGAAGAA
    GCTTATCAAAGTGGAATTGTAATTACACAATTATTTGCAATTGAACCGGCAAGATTAGAT
    CAGCAAATTATCGCATACGCGCAAGAAGTTTTTGAAATAAACATGAAAGTTGCTGAATCT
    TTATCAGGTACAGTGACACCACAAGGGTTTTTCGCAATCATTGAGAAGCCGCATTATGAT
    ATTTCTAAAGCACAACAAGTATTGCTCATCGATCGTGTTCAAGATCCTGGAAATTTAGGC
    ACATTAATTAGAACTGCGGATGCTGCTGGAATGGATGCTGTAATAATGGAGAAGGGTACG
    ACAGATCCTTATCAAGATAAAGTGTTGCGAGCGAGTCAAGGTAGTGTTTTCCATTTGCCA
    GTTATGACACAAGATCTCGATACGTTTATTACTCAATTTAATGGTCCTGTTTATGGTACA
    GCACTTGAAAACGCAGTGGCATACAAAGAAGTTACTTCAAGTGATTCTTTTGCATTACTA
    TTAGGTAATGAGGGAGAAGGTGTTAATCCTGAATTATTAGCACATACTACACAAAATTTA
    ATCATACCTATTTATGGTAAAGCTGAAAGTTTAAATGTAGCGATTGCAGGTAGTATTTTA
    CTTTATCATTTGAAAGGTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    741

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0984 [new locus tag: SA_RS05580 ]
  • symbol: SA0984
  • description: hypothetical protein
  • length: 246
  • theoretical pI: 4.94869
  • theoretical MW: 26913.6
  • GRAVY: -0.0735772

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification RNA methyltransferase, TrmH family, group 3 (TIGR00186; HMM-score: 113.2)
    and 2 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA (cytidine(34)-2'-O)-methyltransferase (TIGR00185; EC 2.1.1.207; HMM-score: 26.2)
    Genetic information processing Protein synthesis tRNA and rRNA base modification RNA methyltransferase, TrmH family, group 1 (TIGR00050; EC 2.1.1.-; HMM-score: 22)
  • TheSEED  :
    • RNA 2'-O-methyltransferase YsgA, TrmH family
  • PFAM:
    SPOUT (CL0098) SpoU_methylase; SpoU rRNA Methylase family (PF00588; HMM-score: 116.4)
    and 2 more
    PELOTA (CL0101) SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding (PF08032; HMM-score: 42.6)
    TSNR_N; Thiostrepton-resistance methylase, N terminus (PF04705; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002824
    • TAT(Tat/SPI): 0.000358
    • LIPO(Sec/SPII): 0.000298
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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