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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1135 [new locus tag: SA_RS06415 ]
  • pan locus tag?: SAUPAN003597000
  • symbol: SA1135
  • pan gene symbol?: ricA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1135 [new locus tag: SA_RS06415 ]
  • symbol: SA1135
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1289842..1290207
  • length: 366
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTATAATAAAGATGACGTGTTGAAACAAGCGGATAATATTGCAAATAAAATTAAAAAT
    TTGGATACTATCAAAACATATCAACAAATTGAAGCACAGATTCATCAGAACCAAACGATA
    AAGACTAAAATGGATATGTTAAAAAAGCATCAAAAACAAGCAGTAAACTTTCAAAATTAC
    GGGAAACAAAATGCGCTAGAACAGTCGGAACATACCATTCAAAGTATAGAAGCAGAAATA
    AATACATTGCCCATAGTTGAACAGTTTCAAACTTCACAATATGAAGCGAATCAATTATTG
    AAAATGTTTGTATCAACAATGGAAACACGTTTAAATGACCATAATAAAGCCAAGCATAGT
    GATTAA
    60
    120
    180
    240
    300
    360
    366

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1135 [new locus tag: SA_RS06415 ]
  • symbol: SA1135
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 7.8816
  • theoretical MW: 14163.9
  • GRAVY: -0.980165

⊟Function[edit | edit source]

  • TIGRFAM:
    hopanoid biosynthesis associated RND transporter like protein HpnN (TIGR03480; HMM-score: 8.1)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair CDK-activating kinase assembly factor MAT1 (TIGR00570; HMM-score: 7)
  • TheSEED  :
    • Regulatory iron-sulfur containing complex subunit RicA
  • PFAM:
    no clan defined Com_YlbF; Control of competence regulator ComK, YlbF/YmcA (PF06133; HMM-score: 55.5)
    and 4 more
    Ubiquitin (CL0072) DUF4430; Domain of unknown function (DUF4430) (PF14478; HMM-score: 13.3)
    no clan defined CemA; CemA family (PF03040; HMM-score: 10.8)
    PK_TIM (CL0151) PEPcase_2; Phosphoenolpyruvate carboxylase (PF14010; HMM-score: 10.7)
    no clan defined Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers (PF16638; HMM-score: 10.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010146
    • TAT(Tat/SPI): 0.000457
    • LIPO(Sec/SPII): 0.001217
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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