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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1313 [new locus tag: SACOL_RS06695 ]
  • pan locus tag?: SAUPAN003597000
  • symbol: SACOL1313
  • pan gene symbol?: ricA
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1313 [new locus tag: SACOL_RS06695 ]
  • symbol: SACOL1313
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1329269..1329634
  • length: 366
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTATAATAAAGATGACGTGTTGAACCAAGCGGATAATATTGCAAATAAAATTAAAAAT
    TTGGATACTATCAAAACATATCAACAAATTGAAGCACAGATTCATCAGAACCAAACGATA
    AAGACTAAAATGGATATGTTAAAAAAGCATCAAAAACAAGCAGTAAACTTTCAAAATTAC
    GGGAAACAAAATGCGCTAGAACAGTCGGAACATACCATTCAGAGTATAGAAGCAGAAATA
    AATACATTGCCCATAGTTGAACAGTTTCAAACTTCACAATATGAAGCGAATCAATTATTG
    AAAATGTTTGTATCAACAATGGAAACACGTTTAAATGACCATAATAAAGCCAAGCATAGT
    GATTAA
    60
    120
    180
    240
    300
    360
    366


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1313 [new locus tag: SACOL_RS06695 ]
  • symbol: SACOL1313
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 7.08949
  • theoretical MW: 14149.8
  • GRAVY: -0.97686

⊟Function[edit | edit source]

  • TIGRFAM:
    hopanoid biosynthesis associated RND transporter like protein HpnN (TIGR03480; HMM-score: 8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair CDK-activating kinase assembly factor MAT1 (TIGR00570; HMM-score: 7.4)
  • TheSEED  :
    • FIG01107972: hypothetical protein
  • PFAM:
    no clan defined Com_YlbF; Control of competence regulator ComK, YlbF/YmcA (PF06133; HMM-score: 56.3)
    and 7 more
    CemA; CemA family (PF03040; HMM-score: 12.2)
    MMS21_N; E3 SUMO-protein ligase MMS21, N-terminal domain (PF22326; HMM-score: 12.1)
    Ycf34; Hypothetical chloroplast protein Ycf34 (PF10718; HMM-score: 11.6)
    Enkurin; Calmodulin-binding (PF13864; HMM-score: 10.9)
    P-loop_NTPase (CL0023) DUF6079; Family of unknown function (DUF6079) (PF19557; HMM-score: 10.8)
    no clan defined ABC_tran_CTD; ABC transporter C-terminal domain (PF16326; HMM-score: 10.5)
    PAS_Fold (CL0183) PAS_13; ERT1/acuK family PAS domain (PF24990; HMM-score: 9.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9823
    • Cytoplasmic Membrane Score: 0.0094
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0075
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010641
    • TAT(Tat/SPI): 0.000469
    • LIPO(Sec/SPII): 0.001477
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYNKDDVLNQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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