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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1318 [new locus tag: SA_RS07480 ]
  • pan locus tag?: SAUPAN003957000
  • symbol: SA1318
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1318 [new locus tag: SA_RS07480 ]
  • symbol: SA1318
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1525565..1526461
  • length: 897
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGTTTAAAAGAATTAAACTAATCTTAATAGCAACGATAATACTATCAGGATGTTCAACT
    ACCAATAACGAATCCAACAATGAAACAAAATCAGTACCAGAAGAAATGGAAGCTTCAAAA
    TATGTAGGACAAGGCTTCCAACTACCTGCAGAAAAAGATGCGATTGAATTTGCGAAGAAG
    CATCGTAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAA
    GTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGTTTATGTGCATTGCGAA
    GATCATGGCATTGTATTTAATGCAAGTCTACCTTTGTACAAAGATGCCATCCATCAAAAA
    GGATCAATGCGTAGTAATGACAACGGTGATGATATGAGTATGATGGTGGGTACAGTGCTG
    AGTGGCTTTGAATATCGAGCGCAAAAAGAAAAGTATGATAATTTATATAAATTTTTAAAA
    GAAAATGAAAAGAAATATCAATATACAGGTTTTACTAAAGAAGCAATTAACAAGACGCAA
    AACGTCGGGTATCAAAATGAATATTTTTATATTACATATTTATCAAGAAATTTAAAAGAA
    TATCGTAAATATTACGAACCATTGATTCATAAAAAGGATAAAGAATTTAAAGAAGGTATG
    CAACGAGCTAGAAAAGAGCTAAACTATACTGCTAATACTGATGTTGTTTCTACACTTTTT
    TCTACTAAGAAAAACTTTACTAAAGACAATACAGTAGATGATGTGATTGAATTGAGTAAT
    AAATTAAAAGATAAACCCAATATGCCTCAAAAATCTCAAGTTACTATTCAATTAGGAAAA
    CCAAGTATAAATACTAAAAAGCCGTTTTATGACGATATAAATCCAATTGAAGGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    897

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1318 [new locus tag: SA_RS07480 ]
  • symbol: SA1318
  • description: hypothetical protein
  • length: 298
  • theoretical pI: 9.15039
  • theoretical MW: 34467.8
  • GRAVY: -0.829195

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 11.3)
  • TheSEED  :
    • FIG01107889: hypothetical protein
  • PFAM:
    no clan defined DUF1672; Protein of unknown function (DUF1672) (PF07901; HMM-score: 442.3)
    and 2 more
    HUP (CL0039) tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain (PF00749; HMM-score: 20)
    LppaM (CL0421) LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site (PF08139; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: -0.33
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: ILSGCST
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000389
    • TAT(Tat/SPI): 0.000073
    • LIPO(Sec/SPII): 0.999331
    • Cleavage Site: CS pos: 17-18. LSG-CS. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFKRIKLILIATIILSGCSTTNNESNNETKSVPEEMEASKYVGQGFQLPAEKDAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKKYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKKDKEFKEGMQRARKELNYTANTDVVSTLFSTKKNFTKDNTVDDVIELSNKLKDKPNMPQKSQVTIQLGKPSINTKKPFYDDINPIEG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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