PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003957000
• symbol^?: —
• synonym:
• description^?: DUF1672 domain-containing protein

  descriptions from strain specific annotations:

  • DUF1672 domain-containing protein
  • putative lipoprotein
  • putative lipoprotein with DUF1672
  • lipoprotein
  • LMP group of surface-lacated membrane protein
• strand^?: -
• coordinates^?: 4269778..4271305
• synteny block^?: BlockID0030030
• occurrence^?: in 61% of 33 strains

⊟Orthologs

COL:
SACOL1531
N315:
SA1318
NCTC8325:
SAOUHSC_01512
Newman:
NWMN_1396
USA300_FPR3757:
SAUSA300_1379
04-02981:
SA2981_1444
08BA02176:
—
11819-97:
—
6850:
RSAU_001356
71193:
—
ECT-R 2:
ECTR2_1340
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_1575
JH9:
SaurJH9_1544
JKD6008:
SAA6008_01458
JKD6159:
—
LGA251:
—
M013:
M013TW_1504
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1430
Mu3:
SAHV_1475 (graD)
Mu50:
SAV1487
MW2:
MW1444
RF122:
—
ST398:
—
T0131:
SAT0131_01581 (lpl8nm)
TCH60:
—
TW20:
SATW20_14860
USA300_TCH1516:
USA300HOU_1428
VC40:
SAVC_06690

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFKRTKLILIATLLLSGCSTTNNESNKETKSVPEEMEASKYVGQGFQPPAEKDVVEFAKK
  N315            MFKRIKLILIATIILSGCSTTNNESNNETKSVPEEMEASKYVGQGFQLPAEKDAIEFAKK
  NCTC8325        MFKRTKLILIATLLLSGCSTTNNESNKETKSVPEEMEASKYVGQGFQPPAEKDVVEFAKK
  Newman          MFKRTKLILIATLLLSGCSTTNNESNKETKSVPEEMEASKYVGQGFQPPAEKDVVEFAKK
  USA300_FPR3757  MFKRTKLILIATLLLSGCSTTNNESNKETKSVPEEMEASKYVGQGFQPPAEKDVVEFAKK
                  **** *******::************:******************** *****.:*****
  
  COL             HKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIESD
  N315            HRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQK
  NCTC8325        HKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIESD
  Newman          HKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIESD
  USA300_FPR3757  HKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIESD
                  *:.:: * ***** **************...****:***:**.******:*: *. *...
  
  COL             SSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFKDNEEKYQYTGFTKEAINKTQ
  N315            GSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKKYQYTGFTKEAINKTQ
  NCTC8325        SSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFKDNEEKYQYTGFTKEAINKTQ
  Newman          SSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFKDNEEKYQYTGFTKEAINKTQ
  USA300_FPR3757  SSLRSEDKGDDMSTLVGTVLSGFEYRTQKEKYDNLYKFFKDNEEKYQYTGFTKEAINKTQ
                  .*:**:*:***** :***********:***********:*:**:****************
  
  COL             NVGYKNEYFYITYSSRSLKEYRKYYEPLIHKNDKEFKEGMEQARKEVNYAANTDTVTTLF
  N315            NVGYQNEYFYITYLSRNLKEYRKYYEPLIHKKDKEFKEGMQRARKELNYTANTDVVSTLF
  NCTC8325        NVGYKNEYFYITYSSRSLKEYRKYYEPLIHKNDKEFKEGMEQARKEVNYAANTDTVTTLF
  Newman          NVGYKNEYFYITYSSRSLKEYRKYYEPLIHKNDKEFKEGMEQARKEVNYAANTDTVTTLF
  USA300_FPR3757  NVGYKNEYFYITYSSRSLKEYRKYYEPLIHKNDKEFKEGMEQARKEVNYAANTDTVTTLF
                  ****:******** **.**************:********::****:**:****.*:***
  
  COL             STKENFTKDNTVDDVIELSDKLYNFKNKPEKSTITIQIGKPTINTKKAFYDDNDPIEYGV
  N315            STKKNFTKDNTVDDVIELSNKLKDKPNMPQKSQVTIQLGKPSINTKKPFYDDINPIE---
  NCTC8325        STKENFTKDNTVDDVIELSDKLYNFKNKPEKSTITIQIGKPTINTKKAFYDDNDPIEYGV
  Newman          STKENFTKDNTVDDVIELSDKLYNFKNKPEKSTITIQIGKPTINTKKAFYDDNDPIEYGV
  USA300_FPR3757  STKENFTKDNTVDDVIELSDKLYNFKNKPEKSTITIQIGKPTINTKKAFYDDNDPIEYGV
                  ***:***************:** :  * *:** :***:***:*****.**** :***   
  
  COL             YRKDE
  N315            ----G
  NCTC8325        YRKDE
  Newman          YRKDE
  USA300_FPR3757  YRKDE