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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1399 [new locus tag: SA_RS07905 ]
  • pan locus tag?: SAUPAN004152000
  • symbol: SA1399
  • pan gene symbol?: ybeY
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1399 [new locus tag: SA_RS07905 ]
  • symbol: SA1399
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1604353..1604820
  • length: 468
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTTTACGATAGATTTTAGCGATCACACAGGCTTAGTTAAAGATGCGTGGTATAAACAA
    ATTGAAGATTTATTAGAATTTGCTAAAAAAGAAGAGCATATAGAAGACGATGCTGAGCTT
    TCTGTTACATTTGTAGATAAACAAGAAATACAAGAAATTAATCGAACATATAGAGATAAA
    GATAAAGTTACAGATGTAATCTCATTTGCTTTAGAAGAAGATGAGCCAGAGATTGATTTT
    AGTGGTCTTGATATACCACGTGTTTTAGGGGATATAATTATCTGTACGGATGTAGCGCAA
    GAACAAGCAAACAATTACGGACATTCTTTTGAACGAGAATTAGGATTTTTAGCATTACAT
    GGATTTTTGCATCTATTAGGTTATGATCATATGACTGAAGCGGATGAAAAGGAAATGTTT
    GGTCGACAAGATACAATATTAAACGCTTATGGATTAACACGAGACTAA
    60
    120
    180
    240
    300
    360
    420
    468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1399 [new locus tag: SA_RS07905 ]
  • symbol: SA1399
  • description: hypothetical protein
  • length: 155
  • theoretical pI: 4.07961
  • theoretical MW: 17951.8
  • GRAVY: -0.474839

⊟Function[edit | edit source]

  • reaction:
    EC 3.1.-.-?  ExPASy
  • TIGRFAM:
    Genetic information processing Protein synthesis Other rRNA maturation RNase YbeY (TIGR00043; HMM-score: 142.1)
  • TheSEED  :
    • Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly
    Phosphorus Metabolism Phosphorus Metabolism - no subcategory Phosphate metabolism  Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly
  • PFAM:
    Peptidase_MA (CL0126) UPF0054; Uncharacterized protein family UPF0054 (PF02130; HMM-score: 160.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001712
    • TAT(Tat/SPI): 0.000448
    • LIPO(Sec/SPII): 0.000536
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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