PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1645 [new locus tag: SA_RS09255 ]
• pan locus tag^?: SAUPAN004614000
• symbol: yent1
• pan gene symbol^?: yent1
• synonym:
• product: enterotoxin Yent1

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1645 [new locus tag: SA_RS09255 ]
• symbol: yent1
• product: enterotoxin Yent1
• replicon: chromosome
• strand: -
• coordinates: 1878533..1878934
• length: 402
• essential: no DEG

⊟Accession numbers

• Gene ID: 1124488 NCBI
• RefSeq: NP_374934 NCBI
• BioCyc:
• MicrobesOnline: 103960 MicrobesOnline

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  ATGAAGTTATTTGCCTTTATCTTCATATGTGTTAAGTCTTGCAGCTTACTATTTATGTTA
  AATGGCAATCCTAAACCAGAACAATTGAATAAAGCGAGTGAATTCACTGGTCTAATGGAT
  AATATGAGGTATTTGTATGATGATAAACACGTATCAGAAACAAACATTAAATCCCAAGAA
  AAGTTTTTACAACATGATTTATTATTTAAAATAAATGGTTCTAAAATTTTAAAAACAGAA
  TTTAATAATAAAAGCCTTTCGGATAAATATAAAAATAAAAACGTAGATTTGTTTGGGACA
  AACTATTATAATCAATGCTATTTTTCATTGGATAATATGGAATTAAATGATGGTAGATTA
  ATTGAAAAAAACGTGTATGTATGGCGGTGTGACCGAGCATGA
  60
  120
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  402
  

⊟Protein

⊟General

• locus tag: SA1645 [new locus tag: SA_RS09255 ]
• symbol: Yent1
• description: enterotoxin Yent1
• length: 133
• theoretical pI: 8.59378
• theoretical MW: 15738
• GRAVY: -0.518045

⊟Function

• TIGRFAM:
• TheSEED  :
  • Enterotoxin, phage associated
• PFAM:
  OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 60.3)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Extracellular
  • Cytoplasmic Score: 0.01
  • Cytoplasmic Membrane Score: 0.09
  • Cellwall Score: 0.18
  • Extracellular Score: 9.72
  • Internal Helix: 1
• DeepLocPro: Extracellular
  • Cytoplasmic Score: 0.028
  • Cytoplasmic Membrane Score: 0.1879
  • Cell wall & surface Score: 0.0002
  • Extracellular Score: 0.7839
• LocateP: N-terminally anchored (No CS)
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.5
  • Signal peptide possibility: 0
  • N-terminally Anchored Score: 2
  • Predicted Cleavage Site: No CleavageSite
• SignalP: Signal peptide LIPO(Sec/SPII) length 13 aa
  • SP(Sec/SPI): 0.348695
  • TAT(Tat/SPI): 0.001295
  • LIPO(Sec/SPII): 0.496178
  • Cleavage Site: CS pos: 13-14. VKS-CS. Pr: 0.3004
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927401 NCBI
• RefSeq: NP_374934 NCBI
• UniProt: A0A0H3JUQ3 UniProt

⊟Additional information (user-provided)

⊟Protein sequence

• MKLFAFIFICVKSCSLLFMLNGNPKPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKSQEKFLQHDLLFKINGSKILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSLDNMELNDGRLIEKNVYVWRCDRA

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: sen < yent2 < yent1

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications