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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1643 [new locus tag: SA_RS09245 ]
  • pan locus tag?: SAUPAN004609000
  • symbol: sen
  • pan gene symbol?: sen
  • synonym:
  • product: enterotoxin SeN

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1643 [new locus tag: SA_RS09245 ]
  • symbol: sen
  • product: enterotoxin SeN
  • replicon: chromosome
  • strand: -
  • coordinates: 1877369..1878145
  • length: 777
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATAAAAAATATTAAAAAGCTTATGAGATTGTTCTACATAGCTGCAATTATAATAACTTTA
    TTATGTCTTATTAATAATAATTATGTTAATGCTGAAGTAGACAAAAAAGATTTAAAGAAA
    AAATCTGATCTAGATAGTAGTAAGTTATTTAATTTAACAAGCTATTATACTGATATAACG
    TGGCAATTAGACGAGTCAAATAAAATTAGTACAGATCAACTACTGAATAATACTATAATA
    TTAAAAAATATTGATATATCCGTACTTAAAACTTCTAGTTTGAAAGTTGAGTTTAACTCA
    TCAGATTTAGCAAATCAATTTAAAGGAAAAAATATAGATATTTATGGACTGTATTTTGGA
    AATAAATGTGTAGGCTTAACTGAAGAAAAAACATCATGCTTATACGGAGGAGTTACGATA
    CATGATGGAAATCAATTAGATGAAGAGAAAGTTATAGGCGTTAATGTATTTAAAGATGGT
    GTCCAACAAGAAGGTTTTGTTATAAAAACCAAAAAGGCTAAAGTAACAGTACAAGAATTA
    GACACTAAAGTTCGATTTAAATTAGAAAATTTATATAAAATATACAATAAAGATACCGGT
    AACATACAAAAAGGATGCATTTTCTTTCATTCTCATAATCATCAAGATCAATCATTTTAT
    TATGATTTATATAACGTAAAAGGTTCAGTGGGAGCAGAGTTTTTTCAATTTTATAGTGAT
    AATAGAACAGTTAGCTCATCTAATTATCATATTGATGTATTTTTATATAAAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    777

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1643 [new locus tag: SA_RS09245 ]
  • symbol: Sen
  • description: enterotoxin SeN
  • length: 258
  • theoretical pI: 8.26345
  • theoretical MW: 29675.6
  • GRAVY: -0.364341

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Enterotoxin, phage associated
  • PFAM:
    Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 84)
    and 3 more
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 38.8)
    BPD_transp_1 (CL0404) YjgP_YjgQ; Predicted permease YjgP/YjgQ family (PF03739; HMM-score: 16.4)
    no clan defined DUF1413; Domain of unknown function (DUF1413) (PF07205; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.98858
    • TAT(Tat/SPI): 0.000717
    • LIPO(Sec/SPII): 0.003337
    • Cleavage Site: CS pos: 31-32. VNA-EV. Pr: 0.9741
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKNIKKLMRLFYIAAIIITLLCLINNNYVNAEVDKKDLKKKSDLDSSKLFNLTSYYTDITWQLDESNKISTDQLLNNTIILKNIDISVLKTSSLKVEFNSSDLANQFKGKNIDIYGLYFGNKCVGLTEEKTSCLYGGVTIHDGNQLDEEKVIGVNVFKDGVQQEGFVIKTKKAKVTVQELDTKVRFKLENLYKIYNKDTGNIQKGCIFFHSHNHQDQSFYYDLYNVKGSVGAEFFQFYSDNRTVSSSNYHIDVFLYKD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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