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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1732 [new locus tag: SA_RS09945 ]
- pan locus tag?: SAUPAN004951000
- symbol: SA1732
- pan gene symbol?: sdcS
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1732 [new locus tag: SA_RS09945 ]
- symbol: SA1732
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1983510..1985072
- length: 1563
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124616 NCBI
- RefSeq: NP_375023 NCBI
- BioCyc: see SA_RS09945
- MicrobesOnline: 104049 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1561ATGGCTTATTTCAATCAACATCAATCAATGATATCGAAAAGGTATTTAACATTCTTTTCA
AAATCAAAGAAAAAGAAACCGTTTAGTGCGGGACAACTTATTGGACTAATATTAGGTCCA
TTACTTTTCCTATTAACATTATTGTTCTTTCATCCACAAGACTTACCTTGGAAAGGCGTA
TATGTCTTAGCGATTACTTTATGGATTGCGACTTGGTGGATTACTGAAGCAATTCCTATT
GCAGCAACGAGCTTATTACCAATTGTGTTATTACCATTAGGTCACATACTTACACCAGAA
CAAGTATCATCCGAATATGGCAATGATATTATCTTTTTGTTTTTAGGTGGATTTATTTTG
GCAATTGCAATGGAAAGATGGAATTTACATACGAGAGTAGCTTTGACTATTATTAATTTA
ATTGGTGCAAGCACTTCAAAAATATTACTTGGATTCATGGTGGCAACAGGATTCTTATCT
ATGTTTGTATCGAACACTGCAGCTGTAATGATTATGATTCCGATTGGTTTAGCAATTATT
AAGGAAGCACATGATTTACAAGAAGCCAATACGAATCAAACAAGTATTCAAAAGTTTGAA
AAATCTCTAGTTTTAGCAATTGGCTATGCAGGTACGATTGGTGGCTTGGGTACATTAATC
GGAACCCCGCCATTAATTATTTTAAAAGGACAATACATGCAACATTTTGGACATGAAATT
AGTTTTGCTAAATGGATGATTGTAGGGATTCCAACGGTCATTGTTTTGTTAGGTATTACT
TGGCTCTATTTAAGATATGTTGCGTTTAGACATGATTTGAAATATTTACCTGGTGGTCAG
ACGTTAATTAAACAAAAGTTAGACGAGCTTGGCAAAATGAAGTATGAAGAAAAGGTAGTA
CAAACTATCTTTGTACTTGCCAGCTTATTATGGATTACAAGAGAGTTTCTTCTGAAAAAA
TGGGAAGTTACGTCATCTGTTGCAGATGGTACGATTGCTATTTTTATATCAATATTATTA
TTTATTATTCCAGCTAAAAATACTGAAAAACATCGCCGTATCATTGACTGGGAAGTTGCA
AAAGAGCTCCCTTGGGGTGTATTAATTTTATTTGGTGGCGGTTTAGCATTAGCGAAAGGT
ATTTCTGAAAGTGGTTTAGCAAAATGGTTAGGCGAACAGTTGAAATCATTAAATGGTGTT
AGTCCGATTCTTATTGTAATTGTCATAACAATCTTTGTCTTATTTTTAACTGAAGTGACA
TCTAATACTGCAACTGCAACGATGATTTTACCGATTTTAGCAACGTTGTCTGTTGCTGTT
GGAGTGCATCCATTACTACTTATGGCACCTGCAGCTATGGCGGCTAACTGTGCATACATG
TTACCAGTAGGGACACCACCGAATGCAATTATCTTTGGTTCAGGTAAAATATCTATCAAA
CAAATGGCATCAGTAGGATTCTGGGTAAACTTAATCAGTGCAATAATTATTATTTTAGTC
GTGTATTATGTAATGCCTATAGTTTTAGGTATTGATATAAATCAACCACTGCCATTGAAA
TAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1732 [new locus tag: SA_RS09945 ]
- symbol: SA1732
- description: hypothetical protein
- length: 520
- theoretical pI: 9.94707
- theoretical MW: 57171.4
- GRAVY: 0.766731
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 294.3)Transport and binding proteins Anions transporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 294.3)
- TheSEED :
- Sodium-dependent anion transporter family
- PFAM: IT (CL0182) Na_sulph_symp; Sodium:sulfate symporter transmembrane region (PF00939; HMM-score: 316.3)and 1 moreCitMHS; Citrate transporter (PF03600; HMM-score: 164.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 15
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002163
- TAT(Tat/SPI): 0.000336
- LIPO(Sec/SPII): 0.020447
- predicted transmembrane helices (TMHMM): 14
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAYFNQHQSMISKRYLTFFSKSKKKKPFSAGQLIGLILGPLLFLLTLLFFHPQDLPWKGVYVLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSKILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHFGHEISFAKWMIVGIPTVIVLLGITWLYLRYVAFRHDLKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFLLKKWEVTSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGIDINQPLPLK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CcpA regulon
CcpA (TF) important in Carbon catabolism; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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