PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1785 [new locus tag: SA_RS10260 ]
• pan locus tag^?: SAUPAN005094000
• symbol: SA1785
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1785 [new locus tag: SA_RS10260 ]
• symbol: SA1785
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2034141..2034389
• length: 249
• essential: no DEG

⊟Accession numbers

• Gene ID: 1124675 NCBI
• RefSeq: NP_375084 NCBI
• BioCyc: see SA_RS10260
• MicrobesOnline: 104110 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  
  ATGATGAATAATCGTGAACAAATTGAACAATCCGTTATAAGTGCTAGTGCGTATAACGGC
  AATGACACAGAGGGATTGCTAAAAGAGATTGAGGACGTGTATAAGAAAGCGCGAGCATTT
  GATGAAATACTTGATGGAATGACAAATGCTATTCAACATTCAGTTAAAGAAGGTATTGAA
  CTTGATGAAGCAGTAGGAATTATGGCAGGTCAAGTTATCTATAAATATGAGGAGGAACAA
  GGAAAATGA
  60
  120
  180
  240
  249
  

⊟Protein

⊟General

• locus tag: SA1785 [new locus tag: SA_RS10260 ]
• symbol: SA1785
• description: hypothetical protein
• length: 82
• theoretical pI: 4.11695
• theoretical MW: 9198.19
• GRAVY: -0.579268

⊟Function

• TIGRFAM:
  hercynine metabolism small protein (TIGR04374; HMM-score: 14.1)
• TheSEED  :
  • Phage phi 11 orf23 protein homolog
• PFAM:
  no clan defined DUF1024; Protein of unknown function (DUF1024) (PF06260; HMM-score: 176.8)
  and 1 more
  WbqC; WbqC-like protein family (PF08889; HMM-score: 12.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.009671
  • TAT(Tat/SPI): 0.001356
  • LIPO(Sec/SPII): 0.001236
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927551 NCBI
• RefSeq: NP_375084 NCBI
• UniProt: A0A0H3JV21 UniProt

⊟Protein sequence

• MMNNREQIEQSVISASAYNGNDTEGLLKEIEDVYKKARAFDEILDGMTNAIQHSVKEGIELDEAVGIMAGQVIYKYEEEQGK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA1784 < SA1785 < SA1786 < SA1787 < SA1788

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications