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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1794 [new locus tag: SA_RS10305 ]
  • pan locus tag?: SAUPAN005103000
  • symbol: SA1794
  • pan gene symbol?: recT
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1794 [new locus tag: SA_RS10305 ]
  • symbol: SA1794
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2038017..2038937
  • length: 921
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACGAATGAATTACTATTAAAAAACAATAAAATGGGCGACAACGTTCTATCTAGAGTT
    AAGACATTAGAAGCACAAGGAGATTTACAGTTTCCTGCAAACTATTCGCCTGAGAATGCA
    ATGAAGTCAGCAATGTTACAACTGCAAGAATTAAAAGGATCTAAAAAAGATGGTTATAAA
    CCAGCGCTGGAATTTGCAACTTCAACCAGCATAGCAAACGCCTTAATGGACATGGTTGTA
    CAAGGTTTAAATCCTGCTAAGAATCAAGGCTATTTCATTATGTATGGCGATAAGGTTCAA
    TTCCAAAGAAGTTACCACGGAACAATGGCAGTAACTAAACGTGTAGCAGGCGCAGAAGAA
    ATTAATGCAGAAGTCATATTTGAAGGTGACGAAGTTAAGTATAAAACTAAAAACGGAAAA
    ATTGTTGAACTTGAACATACACAGTCTTTTGGTAACAGAAACACACAAAACATTATCGGT
    GCATATGCAACAGTTGTATTTAAAGATGAAAGTAGAAATTACACTGAAATCATGACATTT
    GAAGAGATTGAAGAAGCGTGGAAGCAATCACAAATGGTTTATAACGGTGTATTTAAAGAA
    GACGGTACACACAGAAGATTCCCTCAAGAAATGGCTAAAAAGACTGTAATAAACCGTGCA
    TGTAAAAAGATTTTAAACAGCACGGATGACGCTAGTCTTTTATCAAATCAAATTAAAGAA
    TCTGAACAACGTCAACGCAAAGAAGTATTGGATGCAGAAGTTGAAGAAAATGCAAATCAA
    GAACAATTGGATTTTGAACCACCAGTTTTTGAAGAAGCACAATACACAGAATTAGAAAAT
    GAAAAACCTATTGATGTATCTGACTTTGAAGAAATAAAAGAACCTGCAACAGAAAAAGAA
    AGCGAAGAAGAGCCATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1794 [new locus tag: SA_RS10305 ]
  • symbol: SA1794
  • description: hypothetical protein
  • length: 306
  • theoretical pI: 4.48263
  • theoretical MW: 34917.8
  • GRAVY: -0.776144

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair recombinase, phage RecT family (TIGR00616; HMM-score: 51)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions recombinase, phage RecT family (TIGR00616; HMM-score: 51)
  • TheSEED  :
    • Phage recombination protein Bet
    DNA Metabolism DNA repair DNA repair, bacterial  Recombinational DNA repair protein RecT (prophage associated)
  • PFAM:
    no clan defined RecT; RecT family (PF03837; HMM-score: 169.2)
    and 1 more
    DUF3139; Protein of unknown function (DUF3139) (PF11337; HMM-score: 11.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008552
    • TAT(Tat/SPI): 0.000786
    • LIPO(Sec/SPII): 0.001756
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTNELLLKNNKMGDNVLSRVKTLEAQGDLQFPANYSPENAMKSAMLQLQELKGSKKDGYKPALEFATSTSIANALMDMVVQGLNPAKNQGYFIMYGDKVQFQRSYHGTMAVTKRVAGAEEINAEVIFEGDEVKYKTKNGKIVELEHTQSFGNRNTQNIIGAYATVVFKDESRNYTEIMTFEEIEEAWKQSQMVYNGVFKEDGTHRRFPQEMAKKTVINRACKKILNSTDDASLLSNQIKESEQRQRKEVLDAEVEENANQEQLDFEPPVFEEAQYTELENEKPIDVSDFEEIKEPATEKESEEEPF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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