Jump to navigation
Jump to search
NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1795 [new locus tag: SA_RS10310 ]
- pan locus tag?: SAUPAN005104000
- symbol: SA1795
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1795 [new locus tag: SA_RS10310 ]
- symbol: SA1795
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2038939..2040882
- length: 1944
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124685 NCBI
- RefSeq: NP_375094 NCBI
- BioCyc: see SA_RS10310
- MicrobesOnline: 104120 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921ATGAAAATAAATAAGTTAACTATATCGAACTTTGCTGGAATCAAAGAAGAAAAATTTAAC
TTTGACGGTAAAGATGCAAAAATATACGGCAATAATGCGACTGGCAAGACTACAACAGCA
ACCGCATTACAATGGCTGCTTTTCGATAAGGGTTTAGACGGTTCAACCAAATCATTTAAC
CCTGTACCTTTAAACGAAAAAAACGAAGAAAATTATGAGTTAATTCCGACTGTTTTCGCA
GAATTTGAAATCGACGGAAAAATTACGACTTTTAAAAAAGAGTCACATCCTAAGTACACA
ATAAATCAAAAAACGAATCGCAAGGAATACTCACGAAGTCGAACGAAGAAACAATATATC
AATGATGAATCAATAAAAGTAAAGGATTATAAAGCTCGTATTGATGAACTGATTGATGAA
GATGTATTCAAGTTAATTACGAACCCTCAAGCATTTAACTTACTAGATTGGAAGAAACGA
AGAAGTTTGTTGTTTGAAATCGCTAAACCAATCAATGATGAGGATGTCATTAAAACAAAT
GATGATTTTAAAGAACTAAATAATATTCTTGGAGATCACGAAATTGAAACAAAGAAAAAG
ATTCTTACAGACAAGATAAAACAGATTAACAAAGATATCAAAGATATTCCGATACGTATT
AACCAAACGCAACAAAATAAGCAGGATGTACCGGAATTCGATAATGATAGACACACAATC
ATAAAACAAGAAATTGAGCAACTTGAAAATGAGCGTATAGATATTCAAAACGGTGCAGAA
GAAATTAATTTGCGTAACCAATTAGCTGATAAACAATCAGAATTGAAGCGCATAGAAGCT
AATAATAGCGCCAGTAATGAGAACAAAATACATGCTTTAACAAATGAGCTACACGTTGAA
AATGGAACGGTTGCGAATCTTAAAACAAGATTAAAGCAAAACAAACAACAAATTACACAT
GAAGAAAATCGACGTAATCAATTATTAGAAAATCATAAAGGATTAAAAAGTGATTTAGAA
AAAGCTAAAAATCAAAAATTTGAATATCTTGATGACAATGTATGTAGTTGTTGTGGTCAA
CAGTTACCAGCTGAACAAGTGAGTGAGGTAAGAGAAAAAGCATTGCAGAAATTCAATGCA
AACAAATCGAAAGAATTAGAAACAATACAAACATCTATCAATCACATTATTTCAGAGGGC
AAGAAAATAAAGCCAATTATCGAGAAATTAGAGGATGACAACAATAATTTACAAATTAAA
ATCAACGAAGCAGAAGAGCGTTCAGCAAGAATACAAAACAAAATTAATAAGTTGAAAATA
ACTCACGTTGACGTTACGCAAACTGACGAATACAAAGCAGTAATGTTAGAGATAAATGAG
ATTAATCAAAAACGCTCTAACATCAGGAAAACTATTCAAGATAAAGTTTCAGGAATAGAT
GACAAAATAAGCGAACTTACTCAAGAAAAATCAGAAATTGAAGTGTCAATATCAATCGAA
AAATCAAATAAACATCTAGATGATGTTATTTCTGAATTAAGAAATGAAGAAGACAGATTA
TTGGATGAAAAAGAAAAGTATTCACATGACCTTTATATCTTAAAAGAATTTACAACAACA
AAAGTCAAAATGCTTACTGAAAACATCAATAACGAATTTGATATTGCTGAATTTAAGCTA
TTCAATACCTTAGTTAACGGCGAATTAGAAGAAACATGTTCAACAACGGTTAATGGTGTC
GAGTATGACAGCGGTTTAAATAACGCCTCAAGAATTAATGTTGGCTTAGATATCATCAAC
ACACTATCAAAACATTTTAAAGTTACAGCGCCAATATTTATTGATAATGCTGAATCAGTA
ACAGAGCTTATCAAAACAGAATCACAACAAATTCAATTGATAGTAAATGAACAAGATAAA
AAATTAAGAATGGAGACTATATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1620
1680
1740
1800
1860
1920
1944
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1795 [new locus tag: SA_RS10310 ]
- symbol: SA1795
- description: hypothetical protein
- length: 647
- theoretical pI: 5.47733
- theoretical MW: 74916.8
- GRAVY: -0.866151
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)and 3 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 6.1)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 6.1)Regulatory functions DNA interactions Cu(I)-responsive transcriptional regulator (TIGR02044; HMM-score: 5.7)
- TheSEED :
- Phage DNA repair ATPase
- PFAM: P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 25.6)AAA_27; AAA domain (PF13514; HMM-score: 22.6)and 6 moreSMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 18.3)AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.6)no clan defined GIT_CC; GIT coiled-coil Rho guanine nucleotide exchange factor (PF16559; HMM-score: 13.4)P-loop_NTPase (CL0023) AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 9.4)Reo_sigma (CL0326) Reo_sigmaC; Reovirus sigma C capsid protein (PF04582; HMM-score: 8.7)no clan defined Cyc-maltodext_N; Cyclomaltodextrinase, N-terminal (PF09087; HMM-score: 8.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.038254
- TAT(Tat/SPI): 0.001293
- LIPO(Sec/SPII): 0.002308
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTKSFNPVPLNEKNEENYELIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKRRSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRHTIIKQEIEQLENERIDIQNGAEEINLRNQLADKQSELKRIEANNSASNENKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQQLPAEQVSEVREKALQKFNANKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKITHVDVTQTDEYKAVMLEINEINQKRSNIRKTIQDKVSGIDDKISELTQEKSEIEVSISIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKEFTTTKVKMLTENINNEFDIAEFKLFNTLVNGELEETCSTTVNGVEYDSGLNNASRINVGLDIINTLSKHFKVTAPIFIDNAESVTELIKTESQQIQLIVNEQDKKLRMETI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.