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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2053 [new locus tag: SA_RS11800 ]
- pan locus tag?: SAUPAN005709000
- symbol: SA2053
- pan gene symbol?: glcU
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2053 [new locus tag: SA_RS11800 ]
- symbol: SA2053
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2314403..2315266
- length: 864
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124974 NCBI
- RefSeq: NP_375369 NCBI
- BioCyc: see SA_RS11800
- MicrobesOnline: 104395 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841TTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTT
CTTATTAATGTGTTCGTCGGCGGTGGACCTTACAACCAAATTCGTGGTACGACGCTAGGC
GCACTCATTGTTGGATTAGGTTTACTTATTACTGGTTTCGCAAAATTCAATAATCCTACT
GTAATTATTGTCGGTCTTATTTCTGGTGCATTATGGGCGTTTGGACAAGCGAATCAGCTT
AAATCTATTAGTTTAATCGGTGTATCAAATACTATGCCAGTTTCTACAGGTATGCAATTA
GTTGGTACAACATTATTCAGCGTTATCTTTTTAGGTGAATGGTCTTCAATGACTCAAATT
ATCTTTGGTTTAATCGCCATGATATTATTAGTTACTGGTGTAGCACTTACTTCACTTAAA
GCCAAAAATGAACGTCAATCAGATAATCCTGAATTTAAAAAAGCAATGGGTATTTTAATT
GTATCTACAGTTGGATATGTAGGTTTCGTTGTACTTGGTGACATCTTTGGTGTTGGTGGA
ACTGATGCATTGTTCTTCCAATCTGTCGGTATGGCAATTGGTGGCTTTATCCTATCCATG
AATCATAAAACATCACTTAAATCAACAGCACTTAATCTATTGCCAGGTGTGATTTGGGGA
ATTGGTAACTTGTTCATGTTCTATTCTCAACCAAAAGTTGGTGTAGCTACAAGTTTCTCA
TTATCACAGTTACTTGTTATCGTTTCAACATTAGGTGGTATTTTCATTTTAGGAGAAAGA
AAAGATCGTCGTCAGATGACGGGTATTTGGGCAGGTATTATTATTATCGTGATAGCTGCT
ATAATTCTAGGTAATTTGAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2053 [new locus tag: SA_RS11800 ]
- symbol: SA2053
- description: hypothetical protein
- length: 287
- theoretical pI: 10.52
- theoretical MW: 30393.1
- GRAVY: 0.93554
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids RhaT L-rhamnose-proton symporter family protein (TIGR00776; HMM-score: 317)
- TheSEED :
- Glucose:proton symporter GlcU
- PFAM: DMT (CL0184) Sugar_transport; Sugar transport protein (PF06800; HMM-score: 329.9)and 7 moreEamA; EamA-like transporter family (PF00892; HMM-score: 24.5)Ureide_permease; Ureide permease (PF07168; HMM-score: 21.3)GPCR_A (CL0192) Ceramidase; Ceramidase (PF05875; HMM-score: 10.5)PepSY_TM-like (CL0490) PepSY_TM_like_2; Putative PepSY_TM-like (PF16357; HMM-score: 9.8)DMT (CL0184) TMEM144; Transmembrane family, TMEM144 of transporters (PF07857; HMM-score: 8.2)no clan defined PRA1; PRA1 family protein (PF03208; HMM-score: 7.6)Thioredoxin (CL0172) OST3_OST6; OST3 / OST6 family, transporter family (PF04756; HMM-score: 5.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.016323
- TAT(Tat/SPI): 0.000692
- LIPO(Sec/SPII): 0.019264
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVGTTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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