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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS11800 [old locus tag: SA2053 ]
  • pan locus tag?: SAUPAN005709000
  • symbol: SA_RS11800
  • pan gene symbol?: glcU
  • synonym:
  • product: glucose uptake protein GlcU

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS11800 [old locus tag: SA2053 ]
  • symbol: SA_RS11800
  • product: glucose uptake protein GlcU
  • replicon: chromosome
  • strand: +
  • coordinates: 2314403..2315266
  • length: 864
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2314403..2315266) NCBI
  • BioCyc: SA_RS11800 BioCyc
  • MicrobesOnline: see SA2053

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    TTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTT
    CTTATTAATGTGTTCGTCGGCGGTGGACCTTACAACCAAATTCGTGGTACGACGCTAGGC
    GCACTCATTGTTGGATTAGGTTTACTTATTACTGGTTTCGCAAAATTCAATAATCCTACT
    GTAATTATTGTCGGTCTTATTTCTGGTGCATTATGGGCGTTTGGACAAGCGAATCAGCTT
    AAATCTATTAGTTTAATCGGTGTATCAAATACTATGCCAGTTTCTACAGGTATGCAATTA
    GTTGGTACAACATTATTCAGCGTTATCTTTTTAGGTGAATGGTCTTCAATGACTCAAATT
    ATCTTTGGTTTAATCGCCATGATATTATTAGTTACTGGTGTAGCACTTACTTCACTTAAA
    GCCAAAAATGAACGTCAATCAGATAATCCTGAATTTAAAAAAGCAATGGGTATTTTAATT
    GTATCTACAGTTGGATATGTAGGTTTCGTTGTACTTGGTGACATCTTTGGTGTTGGTGGA
    ACTGATGCATTGTTCTTCCAATCTGTCGGTATGGCAATTGGTGGCTTTATCCTATCCATG
    AATCATAAAACATCACTTAAATCAACAGCACTTAATCTATTGCCAGGTGTGATTTGGGGA
    ATTGGTAACTTGTTCATGTTCTATTCTCAACCAAAAGTTGGTGTAGCTACAAGTTTCTCA
    TTATCACAGTTACTTGTTATCGTTTCAACATTAGGTGGTATTTTCATTTTAGGAGAAAGA
    AAAGATCGTCGTCAGATGACGGGTATTTGGGCAGGTATTATTATTATCGTGATAGCTGCT
    ATAATTCTAGGTAATTTGAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    864

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS11800 [old locus tag: SA2053 ]
  • symbol: SA_RS11800
  • description: glucose uptake protein GlcU
  • length: 287
  • theoretical pI: 10.52
  • theoretical MW: 30393.1
  • GRAVY: 0.93554

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids RhaT L-rhamnose-proton symporter family protein (TIGR00776; HMM-score: 317)
  • TheSEED: see SA2053
  • PFAM:
    DMT (CL0184) Sugar_transport; Sugar transport protein (PF06800; HMM-score: 329.9)
    and 7 more
    EamA; EamA-like transporter family (PF00892; HMM-score: 24.5)
    Ureide_permease; Ureide permease (PF07168; HMM-score: 21.3)
    GPCR_A (CL0192) Ceramidase; Ceramidase (PF05875; HMM-score: 10.5)
    PepSY_TM-like (CL0490) PepSY_TM_like_2; Putative PepSY_TM-like (PF16357; HMM-score: 9.8)
    DMT (CL0184) TMEM144; Transmembrane family, TMEM144 of transporters (PF07857; HMM-score: 8.2)
    no clan defined PRA1; PRA1 family protein (PF03208; HMM-score: 7.6)
    Thioredoxin (CL0172) OST3_OST6; OST3 / OST6 family, transporter family (PF04756; HMM-score: 5.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016323
    • TAT(Tat/SPI): 0.000692
    • LIPO(Sec/SPII): 0.019264
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVGTTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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