From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2075 [new locus tag: SA_RS11930 ]
  • pan locus tag?: SAUPAN005741000
  • symbol: FdhD
  • pan gene symbol?: fdhD
  • synonym:
  • product: formate dehydrogenase accessory protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2075 [new locus tag: SA_RS11930 ]
  • symbol: FdhD
  • product: formate dehydrogenase accessory protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2335372..2336169
  • length: 798
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAACAAAGATGTATCTTTAGGTCAACCAATTGTTAGATATGAAGATGGAAAATTATTC
    AATACAACAGATCAATATGTGACAGAATTTCCACTTACAATTATGGTGAATGGTGAAGAA
    TTTGCGACTGTTATATGCAGTCCAACAAACCTTGAGGAGTTAGTCATTGGATTTCTGGCT
    TCGGAAGGTGCCATTTTAAAGCGAGATGAATTAAAATCTGTGCTGATTGATGATAGTAAA
    GGTTTTGCCCATGTTGAACTTAATAAAGATTTAGGCGATCGCTTTCAATATTCCACAAAA
    CGAATGATTGCATCTTGTTGTGGAAAGAGTCGTGAGTTTTATTTTCAAAATGATGCTGCT
    ATCGCTAAAACTTCTATGTCTAAAATCACTTTAACTCCAATACAAATTATTAACATGATG
    ACTCGATTACAAAGTGCAAGTCATATTTACCAAGAAACAGGTGGCTTACATAATGCTGCT
    ATAAGCGATGGTTTGACATTTTTTGTACATCGACAAGACATTGGTAGACATAACGCTCTA
    GATAAATTATATGGATTTTGTATCCAGCGACATATTACTGTCCGAGATAAAGTATTAATT
    TTTAGTGGACGTATTTCATCAGAAATTTTAATTAAAGCCGCGAAAATCGGTGTTGGCGTC
    ATTTTATCTAAATCAGCTCCGACAACGCTTGCTGTAACCTTAGCTAATGACCTAAATATT
    ACGGCAGTAGGTTTTATTCGAAATGGTGGCTTTAATATATATAGTCATCCAGAACGTATC
    ATCGACTCTGAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    798

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2075 [new locus tag: SA_RS11930 ]
  • symbol: FdhD
  • description: formate dehydrogenase accessory protein
  • length: 265
  • theoretical pI: 7.17929
  • theoretical MW: 29397.6
  • GRAVY: -0.0260377

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Anaerobic formate dehydrogenase family accessory protein FdhD (TIGR00129; HMM-score: 240.5)
    Metabolism Energy metabolism Electron transport formate dehydrogenase family accessory protein FdhD (TIGR00129; HMM-score: 240.5)
  • TheSEED  :
    • Sulfur carrier protein FdhD
    Respiration Respiration - no subcategory Formate hydrogenase  Formate dehydrogenase chain D (EC 1.2.1.2)
  • PFAM:
    CDA (CL0109) FdhD-NarQ; FdhD/NarQ family (PF02634; HMM-score: 240.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003781
    • TAT(Tat/SPI): 0.000142
    • LIPO(Sec/SPII): 0.000277
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKDVSLGQPIVRYEDGKLFNTTDQYVTEFPLTIMVNGEEFATVICSPTNLEELVIGFLASEGAILKRDELKSVLIDDSKGFAHVELNKDLGDRFQYSTKRMIASCCGKSREFYFQNDAAIAKTSMSKITLTPIQIINMMTRLQSASHIYQETGGLHNAAISDGLTFFVHRQDIGRHNALDKLYGFCIQRHITVRDKVLIFSGRISSEILIKAAKIGVGVILSKSAPTTLAVTLANDLNITAVGFIRNGGFNIYSHPERIIDSEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA2075&oldid=96409"