PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA2119 [new locus tag: SA_RS12180 ]
• pan locus tag^?: SAUPAN005813000
• symbol: SA2119
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA2119 [new locus tag: SA_RS12180 ]
• symbol: SA2119
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2382754..2383635
• length: 882
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1125046 NCBI
• RefSeq: NP_375441 NCBI
• BioCyc: see SA_RS12180
• MicrobesOnline: 104467 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  
  ATGGCAACTCAAGATCCTAGAACAAAATTTAAAACAACGGAATATGAAAAACAAGAACAA
  GAGGTACCGGGTTTACAATCTGAAATGACGCCAGCACCTGATTGTGGCGAAACGTCTTAC
  CAAGGTCATCAACGCTTACAAGGCTATAAAATGTTAGTCACAGGTGGTGACTCAGCAATA
  GGGCGTGCAGCAGCAATTGCGTATGCTAAAGAAGGTGCAGATGTAGCGATTAACTATCTT
  CCGAGTGAAGAACAAGATGCACAAGAAGTACGCCAAGTAATTGAAGAAAGTGGTCAAAAG
  GCAGTGTTAATTCCTGGTGATATAAGAGATGAGCAGTTCAACTATGACCTTGTTGAACAA
  GCATATCAACAATTAGGTGGCTTAGATAATGTTACTTTAGTTGCTGGACATCAACAGTAT
  CATGATGATATTCATGGATTTACAACTGAGGCATTTACAGAAACATTTGAAACGAATGTC
  TATCCGCTATTTTGGACAGTTCAAAAAGCATTGGAATATTTAAAACCGGGTGCGTCAATT
  ACAACGACATCATCTGTACAAGGTTATAATCCTAGTCCTATTCTTCATGATTATGCCGCT
  TCAAAAGCAGCAATTATTTCATTAACTAAAAGTTTTTCAGAAGAATTAGGACCAAAAGGA
  ATTAGAGTGAACTGTGTAGCACCTGGTCCATTCTGGTCACCATTACAAATTTCTGGTGGG
  CAACCTCAAAGTAAAATCCCAACATTTGGTCAAAAAACACCTTTAGGTCGTGCAGGTCAA
  CCTGTTGAGTTATGTGGAACTTATGTGCTATTAGCGTCAGAGGAATCAAGTTATACAACT
  GGACAAGTGTTCGGTGTTAGCGGTGGAGTGCAAATAGATTAG
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  882
  

⊟Protein

⊟General

• locus tag: SA2119 [new locus tag: SA_RS12180 ]
• symbol: SA2119
• description: hypothetical protein
• length: 293
• theoretical pI: 4.39426
• theoretical MW: 31796.1
• GRAVY: -0.412969

⊟Function

• TIGRFAM:
  Metabolism Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (TIGR01830; EC 1.1.1.100; HMM-score: 139.7)
  Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR03971; EC 1.1.99.-; HMM-score: 126.8)
  Metabolism Energy metabolism Fermentation acetoin reductases (TIGR02415; EC 1.1.1.-; HMM-score: 117.9)
  and 10 more
  Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides 2-deoxy-D-gluconate 3-dehydrogenase (TIGR01832; EC 1.1.1.125; HMM-score: 103.9)
  2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (TIGR03206; EC 1.1.1.-; HMM-score: 94.2)
  3-hydroxybutyrate dehydrogenase (TIGR01963; HMM-score: 91.8)
  acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 90.4)
  Metabolism Fatty acid and phospholipid metabolism Biosynthesis putative 3-oxoacyl-(acyl-carrier-protein) reductase (TIGR01831; HMM-score: 89.6)
  cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (TIGR03325; EC 1.3.1.56; HMM-score: 81.9)
  2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (TIGR04316; EC 1.3.1.28; HMM-score: 77.5)
  rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (TIGR02632; EC 1.1.1.1,4.1.2.19; HMM-score: 71.7)
  Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR04504; EC 1.1.99.-; HMM-score: 62.5)
  pteridine reductase (TIGR02685; EC 1.5.1.33; HMM-score: 56.6)
• TheSEED  :
  • Oxidoreductase, short-chain dehydrogenase/reductase family
• PFAM:
  NADP_Rossmann (CL0063) adh_short_C2; Enoyl-(Acyl carrier protein) reductase (PF13561; HMM-score: 177.7)
  and 4 more
  adh_short; short chain dehydrogenase (PF00106; HMM-score: 141.2)
  KR; KR domain (PF08659; HMM-score: 33.3)
  Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 18.4)
  GDP_Man_Dehyd; GDP-mannose 4,6 dehydratase (PF16363; HMM-score: 11.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.080956
  • TAT(Tat/SPI): 0.0048
  • LIPO(Sec/SPII): 0.002954
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927908 NCBI
• RefSeq: NP_375441 NCBI
• UniProt: A0A0H3JMG3 UniProt

⊟Protein sequence

• MATQDPRTKFKTTEYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKMLVTGGDSAIGRAAAIAYAKEGADVAINYLPSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNVYPLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGGQPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA2119 < SA2120

⊟Regulation

• data available for COL, NCTC8325, Newman

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: data available for COL

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications