PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA2203 [new locus tag: SA_RS12630 ]
• pan locus tag^?: SAUPAN005949000
• symbol: SA2203
• pan gene symbol^?: mdeA
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA2203 [new locus tag: SA_RS12630 ]
• symbol: SA2203
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2471701..2473140
• length: 1440
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1125131 NCBI
• RefSeq: NP_375526 NCBI
• BioCyc: see SA_RS12630
• MicrobesOnline: 104552 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGTCGAAGAAACAAAAATTAACGATGATTATTACTATGCTGATGGGTGGATTTTTTGGA
  TTATTAAATGAAACACTATTAGTGACGGCTTTACCAAGTATTATGAAAGATTTTGAAATT
  TCATATACACAAGTTCAATGGCTGACAACAGCTTTTTTATTGACTAATGGGATTGTTATT
  CCTTTGTCCGCGCTTGTTATACAACGTTATACAACAAGACAAGTGTTTTTAGTGGGTATT
  TCTATCTTTTTCTTAGGTACATTACTCGGCGGCTTGAGTCCGCACTTTGCAACATTATTA
  GTTGCTAGAATTATTCAGGCGTTAGGCGCAGGTATTATGATGCCATTGATGATGACAACG
  ATTTTGGATGTTTTCCAACCGCATGAACGCGGTAAATATATGGGGATATTTGGTTTGGTA
  ATTGGTTTAGCACCAGCTATTGGACCTACTCTTTCAGGTTACCTTGTTGAATATTTAAAC
  TGGAGATCGCTTTTCCATGTTGTCGCTCCAATTGCAGCTGTTACATTTTTAATTGGATTT
  AAAACGATAAAAAATGTTGGAACTACAATTAAAGTACCTATTGATTTTATTTCTGTCATT
  TTTTCTGTACTAGGTTTCGGCGGGTTATTGTATGGAACGAGTTCAATTTCAGAAAAAGGT
  TTTGATAATCCTATCGTATTAGTATCTATGATTGGAGGCGTTGTTTTAGTCGCATTATTT
  GTATTACGTCAATATCGGCTATCAACACCATTATTAAATTTTGCTGTATTTAAAAATAAA
  CAATTTACAGTTGGTATCATTATTATGGGTGTCACAATGGTATCGATGATTGGTTCGGAA
  ACGATTTTACCTATCTTTGTGCAAAATTTATTGCATCGTTCAGCTTTAGATTCTGGATTA
  ACTTTATTACCAGGAGCAATTGTTATGGCATTTATGTCGATGACTTCGGGTGCTTTATAT
  GAAAAGTTTGGTCCTAGAAAGCTTGCTTTAGTAGGTATGGCGATTGTTGTTATTACTACG
  GCTTATTTTGTTGTAATGGATGAACAAACATCAACAATCATGTTGGCAACAGTTTATGCG
  ATTCGAATGGTTGGTATCGCGTTAGGATTAATTCCAGTAATGACCCATACGATGAATCAA
  TTAAAGCCAGAAATGAATGCACACGGTTCATCTATGACAAACACAGTACAACAAATTGCT
  GGTTCTATCGGAACAGCTGCATTAATTACTATTTTATCTCATGCAAGCAAAAACTTTTCT
  CCAACTATGTCAGACTATAATGGCATGAACAAAATTGATATGATGAATCAAATTAAAGTT
  GATACGATGTTGCATGGTTATCACGCTGGATTTTTATTTGCATTATTGATTACAGTTGTT
  AGTTTCTTTTGTTCATTTATGTTACAAGGGAAGAAAAAAGAAGTTGATTCTCGTCAATAA
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⊟Protein

⊟General

• locus tag: SA2203 [new locus tag: SA_RS12630 ]
• symbol: SA2203
• description: hypothetical protein
• length: 479
• theoretical pI: 10.0767
• theoretical MW: 52168.3
• GRAVY: 0.75595

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Toxin production and resistance drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 339.9)
  Metabolism Transport and binding proteins Other drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 339.9)
  and 16 more
  drug resistance transporter, Bcr/CflA subfamily (TIGR00710; HMM-score: 93.9)
  multidrug resistance protein (TIGR00880; HMM-score: 81)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 49.3)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids phosphoglycerate transporter family protein (TIGR00881; HMM-score: 47.7)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, aromatic acid:H+ symporter (AAHS) family (TIGR00895; HMM-score: 45.9)
  Metabolism Transport and binding proteins Unknown substrate MFS transporter, metabolite:H+ symporter (MHS) family protein (TIGR00883; HMM-score: 31.5)
  Metabolism Transport and binding proteins Cations and iron carrying compounds H+ Antiporter protein (TIGR00900; HMM-score: 28.5)
  Metabolism Transport and binding proteins Anions Na(+)-dependent inorganic phosphate cotransporter (TIGR00894; HMM-score: 26.5)
  oxalate/formate antiporter (TIGR04259; HMM-score: 26.5)
  Metabolism Transport and binding proteins Anions nitrite transporter (TIGR00886; HMM-score: 25.8)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, sialate:H+ symporter (SHS) family (TIGR00891; HMM-score: 20.3)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids monocarboxylate transporter (TIGR00892; HMM-score: 17.6)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids polyol permease (TIGR00897; HMM-score: 15.5)
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids oxalate/formate antiporter family transporter (TIGR00890; HMM-score: 15.4)
  synaptic vesicle protein SV2 (TIGR01299; HMM-score: 5.6)
  sodium-independent organic anion transporter (TIGR00805; HMM-score: 4.4)
• TheSEED  :
  • Uncharacterized MFS-type transporter, ErmB family
• PFAM:
  MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 180.3)
  and 3 more
  MFS_2; MFS/sugar transport protein (PF13347; HMM-score: 28.7)
  OATP; Organic Anion Transporter Polypeptide (OATP) family (PF03137; HMM-score: 8.5)
  no clan defined DUF2407_C; DUF2407 C-terminal domain (PF13373; HMM-score: 6.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 14
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: 0
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.25134
  • TAT(Tat/SPI): 0.000869
  • LIPO(Sec/SPII): 0.010949
• predicted transmembrane helices (TMHMM): 14

⊟Accession numbers

• GI: 15927993 NCBI
• RefSeq: NP_375526 NCBI
• UniProt: A0A0H3JVW3 UniProt

⊟Protein sequence

• MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYLNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGVVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAGFLFALLITVVSFFCSFMLQGKKKEVDSRQ

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator: Zur* (repression) regulon

  Zur*

  (TF)

  important in Zinc homeostasis; RegPrecise

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications