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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2376 [new locus tag: SA_RS13605 ]
  • pan locus tag?: SAUPAN006270000
  • symbol: SA2376
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2376 [new locus tag: SA_RS13605 ]
  • symbol: SA2376
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2665292..2665567
  • length: 276
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGACTAAAGAAACAGATAATAAAAAAACAGTAGCGACTTCTGACAACAAAGACACACAG
    CAACAAAATCAAACTGAAGAAGATGAACGTCAAGGTTTGAATGGTTATCGTAAAACAGAT
    CTTGATTTAGAAATTGAGCAAGAGCTACGTGAAATGATGAAAACAGGAGAAAATGAAACG
    AAAAACGACTACAAAAAGTTTAAAGTGTTTTCACTTATTTCAACACTTGTCATTGTCATT
    TTAGCAATTATAAGATTTGTTCATAAAATGATTTAA
    60
    120
    180
    240
    276


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2376 [new locus tag: SA_RS13605 ]
  • symbol: SA2376
  • description: hypothetical protein
  • length: 91
  • theoretical pI: 5.21911
  • theoretical MW: 10698.1
  • GRAVY: -0.88022

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein folding and stabilization cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
    Metabolism Energy metabolism Electron transport cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
  • TheSEED  :
    • FIG01108350: hypothetical protein
  • PFAM:
    Reductase_C (CL0608) AIF_C; Apoptosis-inducing factor, mitochondrion-associated, C-term (PF14721; HMM-score: 13.8)
    and 2 more
    no clan defined DUF6548; Family of unknown function (DUF6548) (PF20185; HMM-score: 10.7)
    EssA; WXG100 protein secretion system (Wss), protein EssA (PF10661; HMM-score: 7.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9955
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0044
  • LocateP: Intracellular /TMH start AFTER 60
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: Possibly Sec-
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011608
    • TAT(Tat/SPI): 0.005388
    • LIPO(Sec/SPII): 0.002872
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTKETDNKKTVATSDNKDTQQQNQTEEDERQGLNGYRKTDLDLEIEQELREMMKTGENETKNDYKKFKVFSLISTLVIVILAIIRFVHKMI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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