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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2397 [new locus tag: SA_RS13720 ]
  • pan locus tag?: SAUPAN006301000
  • symbol: SA2397
  • pan gene symbol?: —
  • synonym:
  • product: 4-aminobutyrate aminotransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2397 [new locus tag: SA_RS13720 ]
  • symbol: SA2397
  • product: 4-aminobutyrate aminotransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 2685873..2687246
  • length: 1374
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    TTGCACATTAATACTGTCAATGGGAGGGGAATGTATATGAGTAAAGCACATCAATTAATT
    CAAGAGGATGAACATTATTTTGCGAAATCAGGACGTATTAAATATTATCCGTTAGTGATT
    GATCATGGATATGGAGCAACATTGGTTGATATTGAGGGGAAGACATATATCGATTTGTTA
    TCGAGTGCAAGTTCTCAAAACGTAGGTCATGCACCTAGAGAAGTAACAGAAGCGATAAAG
    GCACAAGTTGATAAATTTATTCATTATACACCAGCATATATGTATCATGAACCGTTGGTA
    CGTTTAGCTAAGAAGCTTTGTGAGCTTGCACCTGGAGATTTTGAAAAAAGAGTGACCTTC
    GGATTAACCGGATCAGACGCAAATGATGGCATCATTAAATTTGCCAGAGCATATACAGGG
    CGTCCTTATATCATTAGTTTCACTAATGCATATCATGGTTCAACTTTTGGCTCATTGTCT
    ATGTCAGCTATTAGTTTAAATATGCGCAAACATTATGGTCCGTTATTGAATGGTTTTTAT
    CATATTCCGTTTCCAGATAAATATCGTGGTATGTACGAGCAGCCACAAGCTAATTCAGTA
    GAAGAATATTTAGCACCCTTAAAAGAAATGTTTGCGAAATATGTACCTGCTGACGAAGTA
    GCATGTATTGTTATTGAAACGATACAAGGCGATGGTGGACTTTTAGAACCAGTTCCAGGG
    TATTTTGAAGCGTTAGAAAAGATTTGTCGTGAACATGGTATTTTAATCGCTGTCGATGAT
    ATTCAACAAGGTTTTGGGCGAACAGGTACATGGAGTTCAGTCTCGCATTTTAATTTTACG
    CCTGATTTAATCACTTTCGGAAAATCCTTAGCAGGTGGTATGCCCATGTCAGCAATTGTT
    GGACGCAAAGAGATTATGAATTGTTTAGAAGCACCAGCACATTTATTTACAACAGGTGCT
    AATCCAGTTAGTTGTGAAGCTGCATTAGCCACAATTCAAATGATTGAAGATCAGTCGCTT
    CTTCAGGCTAGTGCGGAAAAAGGGGAATATGTTAGGAAACGAATGGATCAATGGGTATCT
    AAATACAATAGTGTAGGCGATGTTAGAGGTAAAGGTCTGAGCATTGGTATTGATATTGTT
    TCCGACAAAAAACTCAAAACACGTGATGCCAGTGCGGCACTTAAAATTTGTAATTACTGC
    TTTGAGCATGGCGTAGTTATTATAGCTGTAGCAGGAAATGTGTTGCGATTCCAACCGCCA
    TTGGTGATAACATATGAGCAATTAGACACGGCGTTAAACACTATAGAAGATGCACTGACT
    GCTTTGGAAGCAGGTAACTTAGATCAATATGACATATCTGGACAAGGTTGGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2397 [new locus tag: SA_RS13720 ]
  • symbol: SA2397
  • description: 4-aminobutyrate aminotransferase
  • length: 457
  • theoretical pI: 6.15301
  • theoretical MW: 50456.3
  • GRAVY: -0.128665

⊟Function[edit | edit source]

  • reaction:
    EC 2.6.1.19?  ExPASy
    4-aminobutyrate--2-oxoglutarate transaminase 4-aminobutanoate + 2-oxoglutarate = succinate semialdehyde + L-glutamate
  • TIGRFAM:
    Metabolism Central intermediary metabolism Other 4-aminobutyrate transaminase (TIGR00700; EC 2.6.1.19; HMM-score: 338.6)
    transaminase, acetylornithine/succinylornithine family (TIGR00707; HMM-score: 300.2)
    and 11 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Biotin adenosylmethionine-8-amino-7-oxononanoate transaminase (TIGR00508; EC 2.6.1.62; HMM-score: 254.1)
    ornithine--oxo-acid transaminase (TIGR01885; EC 2.6.1.13; HMM-score: 242.6)
    Metabolism Central intermediary metabolism Other 2,4-diaminobutyrate 4-transaminase (TIGR00709; EC 2.6.1.-; HMM-score: 225.8)
    Cellular processes Cellular processes Adaptations to atypical conditions diaminobutyrate--2-oxoglutarate aminotransferase (TIGR02407; EC 2.6.1.76; HMM-score: 215.9)
    Metabolism Energy metabolism Amino acids and amines succinylornithine transaminase family (TIGR03246; EC 2.6.1.81; HMM-score: 212.3)
    Metabolism Central intermediary metabolism Polyamine biosynthesis putrescine aminotransferase (TIGR03372; EC 2.6.1.82; HMM-score: 187.1)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713; EC 5.4.3.8; HMM-score: 167.7)
    L-lysine 6-transaminase (TIGR03251; EC 2.6.1.36; HMM-score: 131.9)
    Metabolism Central intermediary metabolism Other 4-aminobutyrate aminotransferase (TIGR00699; EC 2.6.1.19; HMM-score: 100.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Biotin 8-amino-7-oxononanoate synthase (TIGR00858; EC 2.3.1.47; HMM-score: 30.1)
    putative pyridoxal phosphate-dependent acyltransferase (TIGR01825; EC 2.3.1.-; HMM-score: 19.9)
  • TheSEED  :
    • aminotransferase
  • PFAM:
    PLP_aminotran (CL0061) Aminotran_3; Aminotransferase class-III (PF00202; HMM-score: 351.1)
    and 1 more
    Aminotran_1_2; Aminotransferase class I and II (PF00155; HMM-score: 13.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005911
    • TAT(Tat/SPI): 0.000298
    • LIPO(Sec/SPII): 0.000525
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHINTVNGRGMYMSKAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLVDIEGKTYIDLLSSASSQNVGHAPREVTEAIKAQVDKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLTGSDANDGIIKFARAYTGRPYIISFTNAYHGSTFGSLSMSAISLNMRKHYGPLLNGFYHIPFPDKYRGMYEQPQANSVEEYLAPLKEMFAKYVPADEVACIVIETIQGDGGLLEPVPGYFEALEKICREHGILIAVDDIQQGFGRTGTWSSVSHFNFTPDLITFGKSLAGGMPMSAIVGRKEIMNCLEAPAHLFTTGANPVSCEAALATIQMIEDQSLLQASAEKGEYVRKRMDQWVSKYNSVGDVRGKGLSIGIDIVSDKKLKTRDASAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEDALTALEAGNLDQYDISGQGW

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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