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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2398 [new locus tag: SA_RS13725 ]
  • pan locus tag?: SAUPAN006303000
  • symbol: SA2398
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2398 [new locus tag: SA_RS13725 ]
  • symbol: SA2398
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2687468..2687884
  • length: 417
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGCGTTTAAAAGTATTGTTCCATTTCATTGCTGCTATTTTCATATCATTCATGTTGCTA
    TGGATGACCATGTTGTTTGACTTAATAAGCAATCAATCACATTTAAAAGCTTTATTATTG
    AATTTAGATTTTCTAATTCCTTCTGACAATACACCATATATTCTAGAAATAATATGTCAC
    TTACTAATTGGTAGCGTCATTTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGG
    CTTTACTATCTATGTTATATCCCTTTATTTTTCTTATTTATAGCATTGTATCCCTTTTTA
    GTATTTATTGCGCAACGTCCAATTTTTCAATTTAGTGTGACAGAATTAATCGGTTGGATT
    ATTACACATATTTTCTTTATGTCATTAATGGCGTTAGTCATACCTAGAATAAAATAA
    60
    120
    180
    240
    300
    360
    417

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2398 [new locus tag: SA_RS13725 ]
  • symbol: SA2398
  • description: hypothetical protein
  • length: 138
  • theoretical pI: 9.11151
  • theoretical MW: 16390
  • GRAVY: 1.28841

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108232: hypothetical protein
  • PFAM:
    no clan defined Ycf1; Ycf1 (PF05758; HMM-score: 8.4)
    LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 7.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.047783
    • TAT(Tat/SPI): 0.000325
    • LIPO(Sec/SPII): 0.011171
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRLKVLFHFIAAIFISFMLLWMTMLFDLISNQSHLKALLLNLDFLIPSDNTPYILEIICHLLIGSVIYFVFVLLFHTSKRLYYLCYIPLFFLFIALYPFLVFIAQRPIFQFSVTELIGWIITHIFFMSLMALVIPRIK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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