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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13725 [old locus tag: SA2398 ]
  • pan locus tag?: SAUPAN006303000
  • symbol: SA_RS13725
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13725 [old locus tag: SA2398 ]
  • symbol: SA_RS13725
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2687468..2687884
  • length: 417
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002745 (2687468..2687884) NCBI
  • BioCyc: G1G21-2789 BioCyc
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGCGTTTAAAAGTATTGTTCCATTTCATTGCTGCTATTTTCATATCATTCATGTTGCTA
    TGGATGACCATGTTGTTTGACTTAATAAGCAATCAATCACATTTAAAAGCTTTATTATTG
    AATTTAGATTTTCTAATTCCTTCTGACAATACACCATATATTCTAGAAATAATATGTCAC
    TTACTAATTGGTAGCGTCATTTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGG
    CTTTACTATCTATGTTATATCCCTTTATTTTTCTTATTTATAGCATTGTATCCCTTTTTA
    GTATTTATTGCGCAACGTCCAATTTTTCAATTTAGTGTGACAGAATTAATCGGTTGGATT
    ATTACACATATTTTCTTTATGTCATTAATGGCGTTAGTCATACCTAGAATAAAATAA
    60
    120
    180
    240
    300
    360
    417

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS13725 [old locus tag: SA2398 ]
  • symbol: SA_RS13725
  • description: hypothetical protein
  • length: 138
  • theoretical pI: 9.11151
  • theoretical MW: 16390
  • GRAVY: 1.28841

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan defined Ycf1; Ycf1 (PF05758; HMM-score: 8.4)
    LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 7.5)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.047783
    • TAT(Tat/SPI): 0.000325
    • LIPO(Sec/SPII): 0.011171
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit | edit source]

  • GI: 447160373 NCBI
  • RefSeq: WP_001237629 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MRLKVLFHFIAAIFISFMLLWMTMLFDLISNQSHLKALLLNLDFLIPSDNTPYILEIICHLLIGSVIYFVFVLLFHTSKRLYYLCYIPLFFLFIALYPFLVFIAQRPIFQFSVTELIGWIITHIFFMSLMALVIPRIK

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]