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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2436 [new locus tag: SA_RS13965 ]
- pan locus tag?: SAUPAN006374000
- symbol: SA2436
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2436 [new locus tag: SA_RS13965 ]
- symbol: SA2436
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2736403..2739384
- length: 2982
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1125365 NCBI
- RefSeq: NP_375762 NCBI
- BioCyc: see SA_RS13965
- MicrobesOnline: 104788 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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2941ATGAAGAACGCATTTAAATTATTTAAAATGGATCTGAAGAAAGTAGCTAAGACGCCAGCT
GTGTGGATTATCTTAGCAGGCTTAGCTATTTTGCCATCGTTCTACGCTTGGTTTAACTTA
TGGGCAATGTGGGATCCATATGGCAACACGGGACACATCAAGGTCGCAGTCGTTAATGAA
GATAAAGGCGACACAATCAGAGGGAAAAAAGTTAATGTCGGTAATACGATGGTTAATACA
CTCAAGAAAAATAAAAGTTTTGATTGGCAGTTTGTAAGTAGAGAGAAAGCTGATCATGAG
ATAAAAATGGGTAAATATTTTGCAGGTATTTACATCCCATCTAAGTTTACACATGAAATT
ACCGGGACACTACGTAAGCAGCCTCAAAAAGCAGATGTAGAATTTAAGGTGAATCAGAAG
ATTAACGCTGTTGCGTCTAAGCTAACAGATACTGGTTCGTCAGTTGTCGTTGAAAAAGCG
AATGAACAATTTAATAAAACAGTAACTCGAGCATTATTAGAAGAAGCTAACAAAGCAGGT
TTAACTATTGAAGAAAATGTGCCGACAATTAACAAGATAAAAAATGCGGTATATTCAGCA
GATAAAGCTTTACCTAAGATTAATGACTTTGCGAATAAAATTGTGTATTTGAATAACCAC
CAAGCGGATTTAGATAAATATGCCAATGATTTTAGAAAACTAGGAAATTATAAAGGTGAT
ATTTTAGATGCTCAGAAAAAATTAAACGAAGTCAATGGTGCTATTCCGCAACTTAATGAA
AAGGCTAAGTTGATATTAGCTTTAAATAATTATATGCCGAAAATTGAAAAAGCGTTAAAT
TTTGCAGCTGATGACGTGCCAGCGCAGTTCCCTAAAATTAATCAAGGACTTAACATTGCG
AGTCAAGGGATTGATCAAGCTAATGGACAGTTAAATGATGCCAAAGGCTTCGTCACACAA
GTTAGAAGTAGAGTCGGTGATTATCAAGATGCAATTCGACGCGCGCAAGATTTAAATCGA
AGAAACCAGCAACAGATTCCTCAAAATAGCGCGGCGAACAACGAAACATCAAATAGTTCA
CCTGCAGCTGGTAATGGTGTAGCATCAACGCCACCAAGTGCACCAAGTGGCGATACTGCA
CCAAATAATAATGTTACGCAAAATACCGCACCAAATAGTAATAATGCGCCTGTATCGACT
ACACCACAAAGTACAAGCGGGAAAAAAGATGGTCAAAGTTTTGCAGATATAACAACAACA
CAAGTCAGCACAGCTAACGAGAACACACAAAACATTACAGATAAAGATGTTAAATCAATG
GAAGCGGCATTAACGGGCTCTTTATTATCATTATCAAATAATTTAGATACCCAAGCGAAA
GCCGCACAAAAAGATAGTCAGGCATTACGTAATATTTCGTATGGCATTTTAGCATCGGAC
AAGCCTTCTGATTTTAGAGAGTCTTTAGATAATGTTAAGTCCGGTTTAGAATACACAACG
CAATATAATCAACAATTTATCGATACATTAAAAGAGATTGAGAAGAATGAAAATGTTGAT
TTATCAAAAGAAATTGATAAGGTAAAAGCAGCTAATAATCGAATTAATGAATCATTAAGG
TTAGTTAATCAATTAAGCAATGCATTAAAGAATGGTAGTTCAGGAACTGCTGAAGCTACT
AAATTACTAGATCAACTTTCAAAACTAGATTCATCATTATCATCATTTAGAGATTATGTT
AAAAAAGATCTTAACAGCTCTTTAGTATCAATATCACAACGTATTATGGATGAATTGAAC
AAAGGGCAAACTGCATTATCCAATGTTCAGTCTAAATTAAATACAATTGATCAAGTCATT
AACAGTGGACAAGCTATTTTAAAAAATGGTAAAACACGTATTGATCGCTTACAAACAGTA
TTACCAAGTATTGAACAACAATACATTAGTGCTGTTAAAAATGCTCAAGCAAACTTCCCG
AAAGTGAAAAGTGATGTAGCTAAAGCTGCTAACTTTGTGCGCAATGACTTACCACAGTTG
GAACAGCGATTAACTAATGCGACAGCAAGTGTGAATAAAAATTTACCAACGTTATTAAAT
GGTTATGATCAAGCGGTAGGATTACTAAATAAAAATCAGCCACAAGCGAAAAAGGCTTTA
TCAGATTTAGCTGATTTTTCTCAAAATAAATTGCCTGATGTTGAAAAAGATTTGAAAAAA
GCGAATAAAATTTTCAAGAAATTAGACAAAGATGATGCAGTCGACAAATTAATCGACACA
CTTAAGAATGATTTGAAAAAGCAAGCGGGTATTATTGCAAATCCTATTAATAAGAAGACT
GTTGATGTTTTCCCAGTTAAGGATTATGGTTCAGGTATGACACCATTCTATACTGCACTG
TCAGTATGGGTAGGTGCACTCTTGATGGTAAGTTTATTAACGGTTGATAATAAACATAAG
AGTCTAGAGTCAGTCTTAACGACAAGACAAGTGTTCTTAGGTAAGGCAGGATTCTTTATA
ATGCTTGGTATGTTGCAAGCACTCATTGTATCGGTTGGAGATTTGTTAATCCTAAAAGCA
GGAGTTGAGTCACCTGTATTATTTGTACTTATAACGATTTTCTGTTCGATTATTTTCAAC
TCAATCGTATATACGTGCGTATCATTACTTGGTAACCCAGGTAAAGCAATTGCAATCGTA
TTGCTTGTATTACAAATTGCAGGTGGTGGAGGAACATTCCCAATTCAAACTACGCCACAA
TTTTTCCAAAACATTTCGCCATACTTACCATTTACGTATGCAATTGATTCATTACGTGAA
ACAGTAGGCGGTATTGTTCCGGAAATCCTAATTACAAAATTAATTATATTAACGTTATTT
GGCATAGGATTCTTCGTTGTAGGTTTAATTTTAAAACCTGTAACAGATCCATTGATGAAG
CGCGTATCTGAAAAAGTTGACCAAAGTAACGTTACAGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2436 [new locus tag: SA_RS13965 ]
- symbol: SA2436
- description: hypothetical protein
- length: 993
- theoretical pI: 9.90943
- theoretical MW: 108713
- GRAVY: -0.285096
⊟Function[edit | edit source]
- TIGRFAM: YhgE/Pip C-terminal domain (TIGR03062; HMM-score: 167.5)YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 156.2)and 3 moretype VII secretion protein EsaA (TIGR03929; HMM-score: 83.4)Transport and binding proteins Other daunorubicin resistance ABC transporter membrane protein (TIGR01247; HMM-score: 20.7)Protein fate Protein and peptide secretion and trafficking twin arginine-targeting protein translocase, TatA/E family (TIGR01411; HMM-score: 6.2)
- TheSEED :
- Phage infection protein
- PFAM: ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 78.5)and 12 moreABC2_membrane; ABC-2 type transporter (PF01061; HMM-score: 33.7)DUF3533; Protein of unknown function (DUF3533) (PF12051; HMM-score: 29)no clan defined ADIP; Afadin- and alpha -actinin-Binding (PF11559; HMM-score: 17.2)Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 15.4)Traffic (CL0147) V-SNARE_C; Snare region anchored in the vesicle membrane C-terminus (PF12352; HMM-score: 10.9)no clan defined DUF2935; Domain of unknown function (DUF2935) (PF11155; HMM-score: 9.3)DUF842; Eukaryotic protein of unknown function (DUF842) (PF05811; HMM-score: 9.2)NADP_Rossmann (CL0063) NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase (PF03446; HMM-score: 8.9)Traffic (CL0147) Sec20; Sec20 (PF03908; HMM-score: 7.8)no clan defined KxDL; Uncharacterized conserved protein (PF10241; HMM-score: 7.4)ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 6.8)STAND_N (CL0587) SesA; N-terminal domain on NACHT_NTPase and P-loop NTPases (PF17107; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 9.99
- Cellwall Score: 0.01
- Extracellular Score: 0.01
- Internal Helices: 6
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.069564
- TAT(Tat/SPI): 0.001126
- LIPO(Sec/SPII): 0.006006
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKNAFKLFKMDLKKVAKTPAVWIILAGLAILPSFYAWFNLWAMWDPYGNTGHIKVAVVNEDKGDTIRGKKVNVGNTMVNTLKKNKSFDWQFVSREKADHEIKMGKYFAGIYIPSKFTHEITGTLRKQPQKADVEFKVNQKINAVASKLTDTGSSVVVEKANEQFNKTVTRALLEEANKAGLTIEENVPTINKIKNAVYSADKALPKINDFANKIVYLNNHQADLDKYANDFRKLGNYKGDILDAQKKLNEVNGAIPQLNEKAKLILALNNYMPKIEKALNFAADDVPAQFPKINQGLNIASQGIDQANGQLNDAKGFVTQVRSRVGDYQDAIRRAQDLNRRNQQQIPQNSAANNETSNSSPAAGNGVASTPPSAPSGDTAPNNNVTQNTAPNSNNAPVSTTPQSTSGKKDGQSFADITTTQVSTANENTQNITDKDVKSMEAALTGSLLSLSNNLDTQAKAAQKDSQALRNISYGILASDKPSDFRESLDNVKSGLEYTTQYNQQFIDTLKEIEKNENVDLSKEIDKVKAANNRINESLRLVNQLSNALKNGSSGTAEATKLLDQLSKLDSSLSSFRDYVKKDLNSSLVSISQRIMDELNKGQTALSNVQSKLNTIDQVINSGQAILKNGKTRIDRLQTVLPSIEQQYISAVKNAQANFPKVKSDVAKAANFVRNDLPQLEQRLTNATASVNKNLPTLLNGYDQAVGLLNKNQPQAKKALSDLADFSQNKLPDVEKDLKKANKIFKKLDKDDAVDKLIDTLKNDLKKQAGIIANPINKKTVDVFPVKDYGSGMTPFYTALSVWVGALLMVSLLTVDNKHKSLESVLTTRQVFLGKAGFFIMLGMLQALIVSVGDLLILKAGVESPVLFVLITIFCSIIFNSIVYTCVSLLGNPGKAIAIVLLVLQIAGGGGTFPIQTTPQFFQNISPYLPFTYAIDSLRETVGGIVPEILITKLIILTLFGIGFFVVGLILKPVTDPLMKRVSEKVDQSNVTE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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