Jump to navigation
Jump to search
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0463 [new locus tag: SACOL_RS02345 ]
- pan locus tag?: SAUPAN002056000
- symbol: SACOL0463
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0463 [new locus tag: SACOL_RS02345 ]
- symbol: SACOL0463
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 466350..467054
- length: 705
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236477 NCBI
- RefSeq: YP_185353 NCBI
- BioCyc: see SACOL_RS02345
- MicrobesOnline: 911933 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661ATGTCTAAAAATATCAATCAAGCAAATAGTAAATTAAATACGTCAAACAAAAAACTAAAA
CAAGCTTATTCAAAATCCGACAGTAAAAACATGAAAGTTATATACATGCCTCATTGGCTA
GAGTTTTATTCAATTGCTATACATAGCGATGTTACAAGCAATAAAAAAAGATATTATAAA
TCATATAGTAGAGGAACAGTGGTATATGTAAAACTAGGGAGTAATATTGGAAGTGAGTTT
TCTGGTAATCATTTTTGTGTAATATTAGATAACAAAGACAATAAAGGAAAAGAAACAGTT
ACAATAGTTCCACTTTCTTCCAAAGGTAATAAAAATTATTTGAAGTTAAACGAATCGGTG
CTAAATCTAACAGCAACAGATTTAAAAAAACAGATTATCGATATCAGTAGTAAAGTACAA
GCATTAGCCCAAAAATATAGAGAAATTGACATTAAACTTAGCACAGAAGATAAAAAGCTT
TTGTCTAACTTAAATCAAAAAGCTAATGAACTGTATAGAGTGATAGGTGTTTATTCCAAG
CACAAAGGGAAAGATACATACGTTAATATATCAGCAATTACAACAATAAGCAAAAGACGT
ATAAGCAAAATAAATGATTCTGATCCTACTGGAACGATAATAATTTCAGAAGATGACATG
AATGAAATCGAAAAGCAATTAAAGATAAAGTTCTTTTCTAATTGA60
120
180
240
300
360
420
480
540
600
660
705
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0463 [new locus tag: SACOL_RS02345 ]
- symbol: SACOL0463
- description: hypothetical protein
- length: 234
- theoretical pI: 10.2746
- theoretical MW: 26618.3
- GRAVY: -0.623077
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Pathogenicity island SaPIn2
- PFAM: CcdB_PemK (CL0624) PemK_toxin; PemK-like, MazF-like toxin of type II toxin-antitoxin system (PF02452; HMM-score: 52.4)and 4 moreGCS (CL0286) Glu_cys_ligase; Glutamate-cysteine ligase (PF04262; HMM-score: 15.6)no clan defined Muted; Organelle biogenesis, Muted-like protein (PF14942; HMM-score: 10)Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 8.3)DASH_Dad4; DASH complex subunit Dad4 (PF08650; HMM-score: 7.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.0158
- TAT(Tat/SPI): 0.000964
- LIPO(Sec/SPII): 0.002292
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.