PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002056000
• symbol^?: —
• synonym:
• description^?: MazF/PemK family toxin

  descriptions from strain specific annotations:

  • MazF/PemK family toxin
  • PemK-like protein
  • Phage protein
  • pseudogene
• strand^?: -
• coordinates^?: 2538863..2539571
• synteny block^?: BlockID0013780
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL0463
N315:
SA0378
NCTC8325:
SAOUHSC_00377
Newman:
NWMN_0383
USA300_FPR3757:
SAUSA300_0391
04-02981:
SA2981_0391
08BA02176:
C248_0466
11819-97:
—
6850:
—
71193:
ST398NM01_0485
ECT-R 2:
ECTR2_352
ED133:
SAOV_0433c
ED98:
SAAV_0360
HO 5096 0412:
—
JH1:
SaurJH1_0451
JH9:
SaurJH9_0440
JKD6008:
SAA6008_00417
JKD6159:
SAA6159_00367
LGA251:
SARLGA251_03530
M013:
—
MRSA252:
SAR0412
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0414
Mu50:
SAV0417
MW2:
—
RF122:
—
ST398:
SAPIG0485
T0131:
SAT0131_00452
TCH60:
HMPREF0772_10100
TW20:
SATW20_04900
USA300_TCH1516:
USA300HOU_0416
VC40:
SAVC_01715

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYK
  N315            MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYK
  NCTC8325        MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYK
  Newman          MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYK
  USA300_FPR3757  MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYK
                  ************************************************************
  
  COL             SYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESV
  N315            SFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESV
  NCTC8325        SYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESV
  Newman          SYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESV
  USA300_FPR3757  SYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESV
                  *:**********************************************************
  
  COL             LNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSK
  N315            LNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSK
  NCTC8325        LNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSK
  Newman          LNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSK
  USA300_FPR3757  LNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSK
                  **********************:****:********************************
  
  COL             HKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
  N315            HKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
  NCTC8325        HKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
  Newman          HKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
  USA300_FPR3757  HKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
                  ******************************************************