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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0631 [new locus tag: SACOL_RS03260 ]
  • pan locus tag?: SAUPAN002363000
  • symbol: SACOL0631
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0631 [new locus tag: SACOL_RS03260 ]
  • symbol: SACOL0631
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 663049..663501
  • length: 453
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTTTTGGATCTTAAACTTTATCTTTAGCTTTTTAGCTTCAATGTTCTTCTGCGTCATT
    TTTGATGCACCTAGAAAATTATATCTATCATGTGGTTTCGTTGGTACGTGTGGATGGATG
    GTTTACACCTTATTCTTCAACGGCTTTAATGTGCACACTATATACTCTAGTTTCTTTGGT
    AGTTTAGCATTAGGCTTGTTAAGTCATTATATGGCTCGTAAACAAAAAGAACCTGCCATC
    ATTTTTATGGTAACGGGTATCATTCCATTAGTACCTGGTGGCTTAGCATACGATGCTACA
    AAAAATTTAGTCTTATTAAATTTCAGTACAGCAATCAATACCATGCTAGAGGTTACACTT
    ATTGCAGGCGCCATCGCATTAGGTTTATTATTCGCCGACCAAATTTCCAAATTAATTGTT
    TCTGGGTTCGTGAAATCTTTTAAACGATTATAA
    60
    120
    180
    240
    300
    360
    420
    453

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0631 [new locus tag: SACOL_RS03260 ]
  • symbol: SACOL0631
  • description: hypothetical protein
  • length: 150
  • theoretical pI: 9.5134
  • theoretical MW: 16667.9
  • GRAVY: 0.964

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Integral membrane protein
  • PFAM:
    ThrE (CL0470) ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 134.8)
    and 7 more
    ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 38.6)
    no clan defined Flp_Fap; Flp/Fap pilin component (PF04964; HMM-score: 17.1)
    GPCR_A (CL0192) DUF6962; Family of unknown function (DUF6962) (PF22285; HMM-score: 16.9)
    7TMR-DISM_7TM; 7TM diverse intracellular signalling (PF07695; HMM-score: 14.9)
    no clan defined DUF6442; Family of unknown function (DUF6442) (PF20040; HMM-score: 13.5)
    DMT (CL0184) CRCB; CrcB-like protein, Camphor Resistance (CrcB) (PF02537; HMM-score: 7.7)
    no clan defined TgpA_N; TgpA N-terminal domain (PF11992; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.9981
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0012
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.041446
    • TAT(Tat/SPI): 0.001105
    • LIPO(Sec/SPII): 0.119325
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFWILNFIFSFLASMFFCVIFDAPRKLYLSCGFVGTCGWMVYTLFFNGFNVHTIYSSFFGSLALGLLSHYMARKQKEPAIIFMVTGIIPLVPGGLAYDATKNLVLLNFSTAINTMLEVTLIAGAIALGLLFADQISKLIVSGFVKSFKRL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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