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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS03260 [old locus tag: SACOL0631 ]
- pan locus tag?: SAUPAN002363000
- symbol: SACOL_RS03260
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS03260 [old locus tag: SACOL0631 ]
- symbol: SACOL_RS03260
- product: membrane protein
- replicon: chromosome
- strand: -
- coordinates: 663049..663501
- length: 453
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGTTTTGGATCTTAAACTTTATCTTTAGCTTTTTAGCTTCAATGTTCTTCTGCGTCATT
TTTGATGCACCTAGAAAATTATATCTATCATGTGGTTTCGTTGGTACGTGTGGATGGATG
GTTTACACCTTATTCTTCAACGGCTTTAATGTGCACACTATATACTCTAGTTTCTTTGGT
AGTTTAGCATTAGGCTTGTTAAGTCATTATATGGCTCGTAAACAAAAAGAACCTGCCATC
ATTTTTATGGTAACGGGTATCATTCCATTAGTACCTGGTGGCTTAGCATACGATGCTACA
AAAAATTTAGTCTTATTAAATTTCAGTACAGCAATCAATACCATGCTAGAGGTTACACTT
ATTGCAGGCGCCATCGCATTAGGTTTATTATTCGCCGACCAAATTTCCAAATTAATTGTT
TCTGGGTTCGTGAAATCTTTTAAACGATTATAA60
120
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420
453
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS03260 [old locus tag: SACOL0631 ]
- symbol: SACOL_RS03260
- description: membrane protein
- length: 150
- theoretical pI: 9.5134
- theoretical MW: 16667.9
- GRAVY: 0.964
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SACOL0631
- PFAM: UMP_1 (CL0470) ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 134)and 3 moreThrE; Putative threonine/serine exporter (PF06738; HMM-score: 34.1)no clan defined Flp_Fap; Flp/Fap pilin component (PF04964; HMM-score: 16.4)GPCR_A (CL0192) 7TMR-DISM_7TM; 7TM diverse intracellular signalling (PF07695; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.041446
- TAT(Tat/SPI): 0.001105
- LIPO(Sec/SPII): 0.119325
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFWILNFIFSFLASMFFCVIFDAPRKLYLSCGFVGTCGWMVYTLFFNGFNVHTIYSSFFGSLALGLLSHYMARKQKEPAIIFMVTGIIPLVPGGLAYDATKNLVLLNFSTAINTMLEVTLIAGAIALGLLFADQISKLIVSGFVKSFKRL
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.