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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
- pan locus tag?: SAUPAN002870000
- symbol: SACOL0905
- pan gene symbol?: —
- synonym:
- product: pathogenicity island protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
- symbol: SACOL0905
- product: pathogenicity island protein
- replicon: chromosome
- strand: +
- coordinates: 915263..915604
- length: 342
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3237774 NCBI
- RefSeq: YP_185776 NCBI
- BioCyc: see SACOL_RS04645
- MicrobesOnline: 912376 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301ATGGATAAAAAGCAAATAAAAGACTTCGTTTGTGATTATCATAAGCGAACTAGAAGTGAT
GTGTTGATAGATGATGAAATAAATACCGATGAATTCTTTTCAATAGGTGATGAAAATTCC
AATGAATGGATGGCAGACGATAACATTGATGATCATATTGTAAAGAATCACTTAGAAATC
ATTGTTGACCGAGTAGCTAATGATAAAGAGTTTTATATTTTCGATTCTTTAATACAAGGA
CGTAGTTTTAAAGATATTAGTAATGTCTTAGAGTGTTCAGAACAATCTGTAAGATTATGG
TATGAAACCTTATTAGATAAAATTGTGGAGGTGATAGAATGA60
120
180
240
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342
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
- symbol: SACOL0905
- description: pathogenicity island protein
- length: 113
- theoretical pI: 4.11903
- theoretical MW: 13420.8
- GRAVY: -0.523894
⊟Function[edit | edit source]
- TIGRFAM: RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 18.9)
- TheSEED :
- Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI
- PFAM: HTH (CL0123) GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 19.5)Phage_terminase; Phage terminase small subunit (PF10668; HMM-score: 17.8)and 3 moreHTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 13.7)Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 13.5)PDDEXK (CL0236) NgoMIV_restric; NgoMIV restriction enzyme (PF09015; HMM-score: 12)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00269
- TAT(Tat/SPI): 0.000396
- LIPO(Sec/SPII): 0.000732
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDKKQIKDFVCDYHKRTRSDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEIIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.