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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0978 [new locus tag: SACOL_RS05005 ]
- pan locus tag?: SAUPAN003111000
- symbol: SACOL0978
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0978 [new locus tag: SACOL_RS05005 ]
- symbol: SACOL0978
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 984230..986044
- length: 1815
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237677 NCBI
- RefSeq: YP_185846 NCBI
- BioCyc: see SACOL_RS05005
- MicrobesOnline: 912447 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1801ATGAACAAAACAAAGGGTTTTACAAAGTATAAGAAAATGAGATATATTCCAGGGCTCGAT
GGTTTGAGGGCAATCGCTGTTCTAGGAATTATTATTTACCACTTAAATAAGCAATGGTTG
ACAGGTGGCTTTTTAGGTGTGGATACATTTTTTGTGATCTCTGGTTATTTAATTACAAGC
TTATTACTCAAAGAGTATGATGACACAGGTATCATTAAATTGAAAAGCTTTTGGATACGT
CGTTTAAAACGTTTATTACCAGCAGTCATAGTTTTATTAATGGTTGTAGGGACAGCAACC
TTATTATTAAAATCAGATAATATCATTAGGGTTAAACATGATATTATTGCTGCGATATTT
TATGTATCAAACTGGTGGTATATAGCAAAAGATGTTAATTATTTTGAGCAATTTTCATTT
ATGCCATTAAAGCATTTATGGTCTTTAGCAATTGAAGAACAGTTTTACATATTTTTCCCA
GTTATTTTGGTTACATTATTGTTAACAATTAAAAAGCGATACAAAATAGGATTTATTTTT
TGGGGAGTATCAATAATTTCTTTAGGGTTAATGATGTTTATCTATAGTATTAATGGGGAT
CATTCACGAGTGTATTTTGGTACAGATACTAGATTACAGACATTGTTACTGGGTGTTATT
TTAGCTTTTTTATGGCCACCGTTTAAATTGAAAAATGATCCACCTAAAGTTGTAAAATAT
GTTATTGATAGCATAGGTAGTTTATCATTTATAGTACTTATATTATTATTTTTCATTATT
AATGATGAGACGAATTGGATATATGATGGTGGTTTCTATTTAATATCCATATTAACGTTA
TTTATTATTGCTAGTGTCGTTCATCCATCTACATGGATAGCGAAGATATTTTCAAATCCA
GTGTTAGTATTTATCGGGAAAAGGTCTTATAGTTTATATTTATGGCATTTTGCAGTAATT
AGTTTCGTACATAGTTACTATGTAGACGGACAGATACCTGTATATGTGTACTTTATAGAT
ATAAGTTTAACAATTATATTTGCAGAGCTATCATATCGCTTTATAGAAACTCCATTTAGA
AAAGAAGGTATTAAAGCTTTAAATTGGCGACCTTCTTATATACCACAATTTATAAGAATG
GCAATTGTAGTAACCTTGTTAATTCCATTTATGTTGATTTTAGTAGGTGCATTCAATAAA
TATGGTAAAGACATTATTGGAGAAAAAGCGAATAGCTTTGATACCACAATTGAAGATAAT
TATTTAATGCGGATAGCACCAATTGATAACATACACATTGATGGCTTAGTAAGTGAGAAG
AAAAAGGAATCTTCCGACGTATATAATAATATTAAACCTCTTTTAATCGGTGATTCAGTA
ATGGTTGATATCGGTGAGTCATTTAAGTCATCAGTTCCTAAGTCTAGAATTGATGGAAAA
GTAGGGCGTCAATTGTATCAAACCTTACCTTTAGTTAAAGCGAATTATTCACAATATAAA
AAATCATCTGATCAAGTCGTATTAGAATTAGGTACAAATGGCGACTTTACTGTCAAACAG
CTCGACGATTTACTTAATCAATTTGGAAAAGCCAAGATTTATTTAGTTAATACACGTGTT
CCAAGAATTTATGAGGCAAATGTAAATCGATTATTAGCTGACGCGGCGAAACGAAAGTCC
AATGTCACATTAATTGATTGGTATAAGCGATCACAAGGACATAGTGAATATTTTGCACCA
GACGGTGTACATTTAGAGTACAAAGGAGTCCTAGCTTTAAAAGATGAAATATTAAAAGCA
CTTAAAAAGAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0978 [new locus tag: SACOL_RS05005 ]
- symbol: SACOL0978
- description: hypothetical protein
- length: 604
- theoretical pI: 9.97192
- theoretical MW: 69444.5
- GRAVY: 0.302815
⊟Function[edit | edit source]
- reaction: EC 2.3.1.-? ExPASy
- TIGRFAM:
- TheSEED :
- Acyltransferase
- PFAM: Acyl_transf_3 (CL0316) Acyl_transf_3; Acyltransferase family (PF01757; HMM-score: 83)and 1 moreSGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008703
- TAT(Tat/SPI): 0.000122
- LIPO(Sec/SPII): 0.001113
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKTKGFTKYKKMRYIPGLDGLRAIAVLGIIIYHLNKQWLTGGFLGVDTFFVISGYLITSLLLKEYDDTGIIKLKSFWIRRLKRLLPAVIVLLMVVGTATLLLKSDNIIRVKHDIIAAIFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYIFFPVILVTLLLTIKKRYKIGFIFWGVSIISLGLMMFIYSINGDHSRVYFGTDTRLQTLLLGVILAFLWPPFKLKNDPPKVVKYVIDSIGSLSFIVLILLFFIINDETNWIYDGGFYLISILTLFIIASVVHPSTWIAKIFSNPVLVFIGKRSYSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISLTIIFAELSYRFIETPFRKEGIKALNWRPSYIPQFIRMAIVVTLLIPFMLILVGAFNKYGKDIIGEKANSFDTTIEDNYLMRIAPIDNIHIDGLVSEKKKESSDVYNNIKPLLIGDSVMVDIGESFKSSVPKSRIDGKVGRQLYQTLPLVKANYSQYKKSSDQVVLELGTNGDFTVKQLDDLLNQFGKAKIYLVNTRVPRIYEANVNRLLADAAKRKSNVTLIDWYKRSQGHSEYFAPDGVHLEYKGVLALKDEILKALKKK
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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