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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1347 [new locus tag: SACOL_RS06860 ]
- pan locus tag?: SAUPAN003672000
- symbol: SACOL1347
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1347 [new locus tag: SACOL_RS06860 ]
- symbol: SACOL1347
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1355094..1355435
- length: 342
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237195 NCBI
- RefSeq: YP_186200 NCBI
- BioCyc: see SACOL_RS06860
- MicrobesOnline: 912806 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301ATGATAAGTAATGGTAAAATGACGATGAAATTGAATAATGTTAAGCAAAAGCGTCATATT
TTATGCACAAATGAATATAATAATAAGAAAAATAATTCATCTTTATTACCAAGTTATACT
ATAATAGATTCTAATGAAAGTGAAAAGATGACTAAAAAAGAATTTATTGATATTCCAGTT
TTGTTTGATGATGAAGGGAATTTTAGAATAAAACAAGTTATAGATTATAAAAAGATAATA
GGTAAATCTTATGTGAATGGTAAATATATTGAAACGAAATTAGGTAAGGTTCATTATTCT
AAAACTGGTTTTCATGTAGTTCCGTATATTAAAAAGGAGTGA60
120
180
240
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342
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1347 [new locus tag: SACOL_RS06860 ]
- symbol: SACOL1347
- description: hypothetical protein
- length: 113
- theoretical pI: 10.1372
- theoretical MW: 13194.3
- GRAVY: -0.704425
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- hypothetical protein
- PFAM: no clan defined Ntox50; Bacterial toxin 50 (PF15542; HMM-score: 100)and 2 moreDUF4900; Domain of unknown function (DUF4900) (PF16241; HMM-score: 13.9)Phosphatase (CL0031) DSPn; Dual specificity protein phosphatase, N-terminal half (PF14671; HMM-score: 13.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009194
- TAT(Tat/SPI): 0.000311
- LIPO(Sec/SPII): 0.001256
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MISNGKMTMKLNNVKQKRHILCTNEYNNKKNNSSLLPSYTIIDSNESEKMTKKEFIDIPVLFDDEGNFRIKQVIDYKKIIGKSYVNGKYIETKLGKVHYSKTGFHVVPYIKKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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