From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1456 [new locus tag: SACOL_RS07435 ]
  • pan locus tag?: SAUPAN003852000
  • symbol: SACOL1456
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1456 [new locus tag: SACOL_RS07435 ]
  • symbol: SACOL1456
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1471159..1471380
  • length: 222
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAAAAACTATTCGTTTTATCAATTTGTCATGACAGTTCGTGGTCGACACGACGATAAA
    GGTCGTCTAGCAGAAGAGATATTTGACGATCTTGCTTTCCCAAAACACGATGATGATTTT
    AACATACTGTCTGATTATATTGAGACACATGGTGATTTCACATTGCCAATGTCTGTATTT
    GATGATTTATATGAAGAATATACGGAATGGCTAAAATTTTAA
    60
    120
    180
    222

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL1456 [new locus tag: SACOL_RS07435 ]
  • symbol: SACOL1456
  • description: hypothetical protein
  • length: 73
  • theoretical pI: 4.14928
  • theoretical MW: 8869.76
  • GRAVY: -0.617808

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:  
    UPF0346 protein YozE
  • PFAM:
    no clan defined YozE_SAM_like; YozE SAM-like fold (PF06855; HMM-score: 82.5)
    and 2 more
    P-loop_NTPase (CL0023) Terminase_6; Terminase-like family (PF03237; HMM-score: 13.9)
    no clan defined HA; Helicase associated domain (PF03457; HMM-score: 12.7)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011149
    • TAT(Tat/SPI): 0.000218
    • LIPO(Sec/SPII): 0.001612
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKNYSFYQFVMTVRGRHDDKGRLAEEIFDDLAFPKHDDDFNILSDYIETHGDFTLPMSVFDDLYEEYTEWLKF

Experimental data[edit | edit source]

  • quantitative data / protein copy number per cell: 168 [1]

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

Relevant publications[edit | edit source]