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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL2011 [new locus tag: SACOL_RS10500 ]
- pan locus tag?: SAUPAN005205000
- symbol: SACOL2011
- pan gene symbol?: ktrB
- synonym:
- product: sodium transport family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL2011 [new locus tag: SACOL_RS10500 ]
- symbol: SACOL2011
- product: sodium transport family protein
- replicon: chromosome
- strand: +
- coordinates: 2071059..2072366
- length: 1308
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3238599 NCBI
- RefSeq: YP_186831 NCBI
- BioCyc: see SACOL_RS10500
- MicrobesOnline: 913486 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGAACAAAGTCCACAAACCTTTATATTTTTATTTAATGCTTTTCTTCTCTACAACTATC
ATAGGTGCACTTTTATTGTATTTACCTTTTACTGGTAAAAAGCCAATATCTTTTTTAGAT
GCCCTATTTATAGCTTCAAGTGCATTTACAGTTACTGGCTTGTCCCCAGTTGATATAGGA
TCACAGTTTAATATACTTGGTGAGATAGTAATACTATTATTAATTCAAATAGGTGGTCTG
GGTATCGTGACCGTAACCCTATTGACACTAGTATTTTTAAATAGAAAGATATCAATGAAA
AATAGATTCTTGATTATGGTTACATGGAATATTGACGAACCTGGTGGTGTTATTAAGCTA
ATTAAACACTTGGCTATTTATAGTTTAGTCACTGAATTAATTGGTATGATTTGTTTGTGT
TTATCTTTTATACCAAAATTTGGTATAGGCAAAGGTTTATTTTTAAGCTTATTCACATCA
GTATCAGCTTTTAATAATGCTGGATTTGCCCTTTTTAAGAATAACTTAATAGATTATTCT
AGTGATCCAATTGTCATTATTACAATCTCAATACTCATAATATTTGGAGGTATTGGACAT
TTTGTCGTGATAGACTTTATTAATTGTAAAAAATTGAGTAAATTATCTTTACATTCTAAA
TTAGTCTTAACTACAACTAGTATCCTAATAATTATAGGAGCTATTACATTCTTTTTATTA
GAACAGTTTAATACTATGCAACATATGGGACTAGTTGAAAAAATCGGAAATTCTTTTTTC
CAATCAGTAACAACACGAACAGCGGGTTTTAACAGTATAGATATAGCAAGCATTAACAAA
TCTACCGCATTAATGTTAATGCTACTTATGTTTATTGGTGGTGCCCCTCTCAGTGCAGCT
GGAGGAATTAAAATAACTACTTTTGCAGTTGCGTTTATTTTTGTACTAAATTATATACGT
AAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCT
ATTGTTACCATTAATATCTCATTTCTATTTATCAGCATCATTACTTTTATATTATCGATA
ATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAACA
GTAGGGTTAAGTATGAACCTTACCACAGAATATCATGGTATTACTAAAATAATTATTATA
TTCGTTATGCTTTGCGGTAAAGTAGGACTATTAACTTTATTAAGAACATTTATACCACCA
AAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL2011 [new locus tag: SACOL_RS10500 ]
- symbol: SACOL2011
- description: sodium transport family protein
- length: 435
- theoretical pI: 10.2528
- theoretical MW: 47978.5
- GRAVY: 0.914713
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, TrkH family (TIGR00933; HMM-score: 330.4)and 1 moreTransport and binding proteins Cations and iron carrying compounds potassium uptake protein, Trk family (TIGR00934; HMM-score: 95.2)
- TheSEED :
- KtrAB potassium uptake system, integral membrane component KtrB
Potassium metabolism Potassium metabolism - no subcategory Hyperosmotic potassium uptake Potassium uptake protein, integral membrane component, KtrBand 1 more - PFAM: Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 177.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.069376
- TAT(Tat/SPI): 0.001357
- LIPO(Sec/SPII): 0.027944
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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