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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1815 [new locus tag: SA_RS10425 ]
  • pan locus tag?: SAUPAN005205000
  • symbol: SA1815
  • pan gene symbol?: ktrB
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1815 [new locus tag: SA_RS10425 ]
  • symbol: SA1815
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2054835..2056142
  • length: 1308
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAACAAAGTCCACAAACCTTTATATTTTTATTTAATGCTTTTCTTCTCTACAACTATC
    ATAGGTGCTCTTTTATTATATTTACCTTTCACTGGTAAAAAGCCAATATCTTTTTTAGAT
    GCCCTATTTATAGCTTCAAGTGCATTTACAGTTACTGGCCTATCCCCAGTTGATATAGGA
    TCACAGTTTAATATACTTGGTGAAATAGTAATACTATTATTAATTCAAATAGGTGGTCTG
    GGTATCGTGACCGTAACCCTATTGACACTAGTATTTTTAAATAGAAAGATATCAATGAAA
    AATAGATTCTTGATTATGGTTACATGGAATATTGACGAACCTGGTGGTGTTATTAAGCTA
    ATTAAACACTTGGCTATTTATAGTTTAGTCACTGAATTAATTGGTATGATTTGTTTGTGT
    TTATCTTTTATACCAAAATTTGGTATAGGCAAAGGTTTATTTTTAAGCTTATTCACATCA
    GTATCAGCTTTTAATAATGCTGGATTTGCCCTTTTTAAGAATAACTTAATAGATTATTCT
    AGTGATCCAATTGTCATTATTACAATCTCAATACTCATAATATTTGGAGGTATTGGACAT
    TTTGTCGTAATAGACTTTATTAATTGTAAAAAATTGAGTAAATTATCTTTACATTCTAAA
    TTAGTCTTAACTACAACTAGTATCCTAATAATTATAGGAGCTATTACATTCTTTTTATTA
    GAACAGTTTAATACTATGCAACATATGGGACTAGTTGAAAAAATCGGAAATTCTTTTTTC
    CAATCAGTAACAACACGAACAGCGGGTTTTAACAGTATTGATATAGCAAGCATTAACAAA
    TCTACCGCCTTAATGTTAATGTTACTTATGTTTATTGGTGGTGCCCCTCTCAGTGCAGCT
    GGAGGAATTAAAATAACTACTTTTGCAGTGGCGTTTATATTTGTTTTAAATTATATACGT
    AAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCT
    ATTGTTACCATTAATATCTCATTTCTATTTATCAGTATCATTACTTTTATATTATCGATA
    ATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAACA
    GTCGGGTTAAGTATGAACCTTACCACAGAATATCATGGTATTACTAAAATAATTATTATA
    TTCGTTATGCTTTGCGGTAAAGTAGGACTATTAACTTTATTAAGAACATTTATACCACCA
    AAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1308

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1815 [new locus tag: SA_RS10425 ]
  • symbol: SA1815
  • description: hypothetical protein
  • length: 435
  • theoretical pI: 10.2528
  • theoretical MW: 47978.5
  • GRAVY: 0.914713

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, TrkH family (TIGR00933; HMM-score: 330.4)
    and 1 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, Trk family (TIGR00934; HMM-score: 95.2)
  • TheSEED:  
    Potassium metabolism Potassium metabolism - no subcategory Hyperosmotic potassium uptake  Potassium uptake protein, integral membrane component, KtrB
    and 1 more
    Potassium homeostasis  Potassium uptake protein, integral membrane component, KtrB
  • PFAM:
    Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 177.7)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.069376
    • TAT(Tat/SPI): 0.001357
    • LIPO(Sec/SPII): 0.027944
  • predicted transmembrane helices (TMHMM): 11

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

  • SA1815 no polycistronic organisation predicted

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]