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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2154 [new locus tag: SACOL_RS11275 ]
  • pan locus tag?: SAUPAN005509000
  • symbol: rocF
  • pan gene symbol?: rocF
  • synonym:
  • product: arginase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2154 [new locus tag: SACOL_RS11275 ]
  • symbol: rocF
  • product: arginase
  • replicon: chromosome
  • strand: -
  • coordinates: 2225416..2226324
  • length: 909
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACAAAGACAAAAGCAATTGATATTATAGGTGCACCATCAACATTTGGACAAAGAAAA
    TTAGGTGTTGATTTAGGACCAACAGCAATTAGATATGCTGGATTAATTTCAAGATTAAAG
    CAATTAGACCTTGATGTATATGACAAGGGGGATATTAAGGTACCTGCTGTGAACATTGAA
    AAATTTCATAGTGAACAAAAAGGATTAAGAAATTATGATGAAATTATAGATGTTAATCAA
    AAATTAAATAAAGAGGTTTCAGCATCAATTGAAAATAACAGATTTCCTCTAGTTCTTGGT
    GGAGATCATTCTATTGCGGTAGGTTCAGTATCAGCAATAAGTAAACATTATAATAATTTA
    GGTGTTATTTGGTATGATGCACATGGTGATTTAAATATACCTGAAGAGTCACCAAGTGGA
    AATATTCATGGTATGCCTCTAAGGATTTTGACAGGCGAAGGTCCCAAAGAACTTTTAGAA
    TTAAATAGTAATGTAATCAAGCCAGAAAACATCGTACTAATTGGTATGAGAGATTTAGAT
    AAAGGTGAAAGACAATTTATCAAAGATCATAATATTAAAACATTTACTATGTCAGATATT
    GATAAATTGGGGATAAAGGAAGTAATTGAAAATACAATAGAATATTTGAAGTCACGCAAT
    GTTGATGGCGTTCATTTATCTTTAGATGTTGATGCTTTAGATCCGCTTGAAACGCCAGGC
    ACTGGTACTAGAGTTTTGGGTGGTCTTAGTTATAGAGAAAGCCATTTTGCATTGGAATTA
    CTGCATCAATCACATTTAATTTCCTCAATGGATTTAGTTGAAGTAAATCCATTGATTGAC
    AGTAATAATCATACTGCTGAACAAGCGGTTTCATTAGTTGGAACATTTTTTGGTGAAACT
    TTATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL2154 [new locus tag: SACOL_RS11275 ]
  • symbol: RocF
  • description: arginase
  • length: 302
  • theoretical pI: 5.21395
  • theoretical MW: 33264.6
  • GRAVY: -0.216887

Function[edit | edit source]

  • reaction:
    EC 3.5.3.1?  ExPASy
    Arginase L-arginine + H2O = L-ornithine + urea
  • TIGRFAM:
    arginase (TIGR01229; EC 3.5.3.1; HMM-score: 329.6)
    and 2 more
    agmatinase (TIGR01230; EC 3.5.3.11; HMM-score: 108)
    Metabolism Energy metabolism Amino acids and amines formimidoylglutamase (TIGR01227; EC 3.5.3.8; HMM-score: 98.8)
  • TheSEED  :
    • Arginase (EC 3.5.3.1)
    Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine and Ornithine Degradation  Arginase (EC 3.5.3.1)
  • PFAM:
    Arginase (CL0302) Arginase; Arginase family (PF00491; HMM-score: 258.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mn2+
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003747
    • TAT(Tat/SPI): 0.000601
    • LIPO(Sec/SPII): 0.000629
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIEKFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGETLL

Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2] [3]
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  3. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

Relevant publications[edit | edit source]

S W Wu, H De Lencastre
Mrp--a new auxiliary gene essential for optimal expression of methicillin resistance in Staphylococcus aureus.
Microb Drug Resist: 1999, 5(1);9-18
[PubMed:10332717] [WorldCat.org] [DOI] (P p)