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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2349 [new locus tag: SACOL_RS12335 ]
  • pan locus tag?: SAUPAN005855000
  • symbol: SACOL2349
  • pan gene symbol?: —
  • synonym:
  • product: TetR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2349 [new locus tag: SACOL_RS12335 ]
  • symbol: SACOL2349
  • product: TetR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2408898..2409449
  • length: 552
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATAT
    CCTTTTCAAGAAATATCCACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACT
    TTTTATGATTATTACAAAGATAAATTTGATTTATTGGATACCATCAACTCAAAGCATAAG
    GAAAAATTCCAATTTCTTCTAAGCGCGCTACATCATAATTTCGAAAATATTAAACAGGAT
    AAGCTTAAACTTTATAAATTCTTCATTATTATTGCTAAGTATATCAAGCACAATGAGCAG
    TTTTTCAAAGACATTTTAGTTACCTATCCAATGAAAACATTATTCATAGACTATATAAAT
    TTAGCGAGAGATTACTATCAACAAATTATGAATGACTATAGTACTACAGTAACCAATAAA
    CAGCTTTATGTTACATATATCATAGGCGGTCAAGCTGGGGTGTTTATTAATTGGCTTTCG
    AATGGTTGTAATGAATCACCTGAAGAAGTTGCTGACATTTTATTGGCTAATACGATTAAA
    CTTCAAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    552

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2349 [new locus tag: SACOL_RS12335 ]
  • symbol: SACOL2349
  • description: TetR family transcriptional regulator
  • length: 183
  • theoretical pI: 8.02844
  • theoretical MW: 21726
  • GRAVY: -0.257923

⊟Function[edit | edit source]

  • TIGRFAM:
    probable dihydroxyacetone kinase regulator (TIGR02366; HMM-score: 42.7)
    and 2 more
    Signal transduction Regulatory functions DNA interactions mycofactocin system transcriptional regulator (TIGR03968; HMM-score: 18.9)
    glutaredoxin (TIGR02180; HMM-score: 12.7)
  • TheSEED  :
    • TetR family regulatory protein of MDR cluster
    Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Multidrug Resistance, 2-protein version Found in Gram-positive bacteria  TetR family regulatory protein of MDR cluster
  • PFAM:
    HTH (CL0123) TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 26.3)
    no clan defined TetR_C_8; Transcriptional regulator C-terminal region (PF14278; HMM-score: 23.4)
    and 2 more
    HTH (CL0123) HTH_Tnp_1_2; Helix-turn-helix of insertion element transposase (PF13022; HMM-score: 19.1)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.028714
    • TAT(Tat/SPI): 0.000352
    • LIPO(Sec/SPII): 0.003528
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHKEKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYINLARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIKLQN

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1]
  • quantitative data / protein copy number per cell: 38 [2]
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  2. ↑ Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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