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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005855000
- symbol?: —
- synonym:
- description?: TetR family transcriptional regulator
- TetR family transcriptional regulator
- TetR/AcrR family transcriptional regulator
- transcriptional regulator TetR family protein
- bacterial regulatory s, tetR family protein
- regulatory proteins, tetR family protein
- regulatory protein TetR family
- TetR family regulatory protein of MDR cluster
- transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5931456..5932007
- synteny block?: BlockID0046000
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2293
08BA02176:
C248_2398
11819-97:
MS7_2372
6850:
RSAU_002188
71193:
ST398NM01_2406
ECT-R 2:
ECTR2_2214
ED133:
SAOV_2397
ED98:
SAAV_2418
HO 5096 0412:
SAEMRSA15_22520
JH1:
SaurJH1_2424
JH9:
SaurJH9_2378
JKD6008:
SAA6008_02391
JKD6159:
SAA6159_02258
LGA251:
SARLGA251_21360
M013:
M013TW_2311
MRSA252:
SAR2439
MSHR1132:
SAMSHR1132_21790
MSSA476:
SAS2245
Mu3:
SAHV_2338
Mu50:
SAV2354
MW2:
MW2275
RF122:
SAB2233
ST398:
SAPIG2406
T0131:
SAT0131_02541
TCH60:
HMPREF0772_10840
TW20:
SATW20_24850
USA300_TCH1516:
USA300HOU_2336
VC40:
SAVC_10630
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
N315 MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
NCTC8325 MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
Newman MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
USA300_FPR3757 MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
************************************************************
COL EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
N315 EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
NCTC8325 EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
Newman EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
USA300_FPR3757 EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
************************************************************
COL LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
N315 LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
NCTC8325 LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
Newman LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
USA300_FPR3757 LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
************************************************************
COL LQ-N
N315 LQIQ
NCTC8325 LQ-N
Newman LQ-N
USA300_FPR3757 LQ-N
** :