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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2374 [new locus tag: SACOL_RS12465 ]
  • pan locus tag?: SAUPAN005895000
  • symbol: SACOL2374
  • pan gene symbol?: —
  • synonym:
  • product: TetR family transcriptional regulator

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2374 [new locus tag: SACOL_RS12465 ]
  • symbol: SACOL2374
  • product: TetR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2432565..2433188
  • length: 624
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGAAAGAAGATAGGCGAATTAGAAAGACAAAGTCCTCCATTAAACAAGCGTTCACTAAA
    TTACTACAAGAAAAAGATTTAGAAAAGATTACCATTCGCGACATAACAACACGCGCTGAT
    ATCAATAGAGGGACATTTTACTTACATTACGAGGATAAATATATGTTACTCGCAGATATG
    GAAGATGAGTATATTTCAGAACTAACGACATATACTCAATTTGATTTGTTACGCGGTTCT
    TCAATTGAAGACATTGCGAATACTTTTGTAAATAATATACTCAAAAATATTTTCCAACAT
    ATTCATGATAATTTAGAGTTTTATCATACTATTTTACAATTGGAACGCACGAGTCAATTA
    GAATTGAAAATCAACGAACATATTAAAAATAATATGCAACGTTACATTAGTATCAATCAT
    TCTATCGGAGGCGTTCCAGAGATGTATTTTTACAGTTACGTTTCCGGAGCAACAATTTCA
    ATTATTAAATACTGGGTAATGGACAAACAGCCCATTTCAGTTGATGAATTAGCTAAACAT
    GTGCATAATATTATTTTTAATGGTCCATTAAGAATAATGGCAGAAAACCGTTTGCATAAA
    TCAAACCTTGATTCACTAACTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    624


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2374 [new locus tag: SACOL_RS12465 ]
  • symbol: SACOL2374
  • description: TetR family transcriptional regulator
  • length: 207
  • theoretical pI: 7.04064
  • theoretical MW: 24477.8
  • GRAVY: -0.450242

⊟Function[edit | edit source]

  • TIGRFAM:
    probable dihydroxyacetone kinase regulator (TIGR02366; HMM-score: 54.6)
    and 3 more
    Signal transduction Regulatory functions DNA interactions mycofactocin system transcriptional regulator (TIGR03968; HMM-score: 16.7)
    Signal transduction Regulatory functions DNA interactions transcriptional repressor BetI (TIGR03384; HMM-score: 16.6)
    conserved hypothetical protein (TIGR03492; HMM-score: 12)
  • TheSEED  :
    • Transcriptional regulator, AcrR family
  • PFAM:
    TetR_C (CL0174) TetR_C_8; Transcriptional regulator C-terminal region (PF14278; HMM-score: 51.5)
    and 5 more
    HTH (CL0123) TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 31.8)
    HTH_Tnp_1_2; Helix-turn-helix of insertion element transposase (PF13022; HMM-score: 17)
    DUF6262; Family of unknown function (DUF6262) (PF19776; HMM-score: 14.1)
    TetR_C (CL0174) TetR_C_4; YsiA-like protein, C-terminal region (PF08359; HMM-score: 10)
    TRD (CL0477) DUF6943; Family of unknown function (DUF6943) (PF22105; HMM-score: 8.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9099
    • Cytoplasmic Membrane Score: 0.0632
    • Cell wall & surface Score: 0.002
    • Extracellular Score: 0.0249
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002891
    • TAT(Tat/SPI): 0.000355
    • LIPO(Sec/SPII): 0.000452
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADMEDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQLELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKHVHNIIFNGPLRIMAENRLHKSNLDSLT

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: Cytoplasmic [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for JSNZ

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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