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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005895000
- symbol?: —
- synonym:
- description?: TetR/AcrR family transcriptional regulator
- TetR/AcrR family transcriptional regulator
- TetR family transcriptional regulator
- transcriptional regulator TetR family protein
- bacterial regulatory s, tetR family protein
- regulatory proteins, tetR family protein
- TetR family regulatory protein
- Transcriptional regulator, TetR family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5965370..5965993
- synteny block?: BlockID0046400
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2314
08BA02176:
C248_2423
11819-97:
MS7_2394
6850:
RSAU_002213
71193:
ST398NM01_2430
ECT-R 2:
ECTR2_2236
ED133:
SAOV_2423
ED98:
SAAV_2441
HO 5096 0412:
SAEMRSA15_22760
JH1:
SaurJH1_2447
JH9:
SaurJH9_2401
JKD6008:
SAA6008_02414 (tetR)
JKD6159:
SAA6159_02279 (tetR)
LGA251:
SARLGA251_21610
M013:
M013TW_2337
MRSA252:
SAR2464
MSHR1132:
SAMSHR1132_22040
MSSA476:
SAS2267
Mu3:
SAHV_2359
Mu50:
SAV2375
MW2:
MW2297
RF122:
SAB2255
ST398:
SAPIG2430
T0131:
SAT0131_02566
TCH60:
HMPREF0772_10813
TW20:
SATW20_25070
USA300_TCH1516:
USA300HOU_2360
VC40:
SAVC_10745
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADM
N315 MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADM
NCTC8325 MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADM
Newman MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADM
USA300_FPR3757 MKEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADM
************************************************************
COL EDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQL
N315 EDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQL
NCTC8325 EDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQL
Newman EDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQL
USA300_FPR3757 EDEYISELTTYTQFDLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTSQL
************************************************************
COL ELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKH
N315 ELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKH
NCTC8325 ELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKH
Newman ELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKH
USA300_FPR3757 ELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDELAKH
************************************************************
COL VHNIIFNGPLRIMAENRLHKSNLDSLT
N315 VHNIIFNGPLRIMAENRLHKSNLDSLT
NCTC8325 VHNIIFNGPLRIMAENRLHKSNLDSLT
Newman VHNIIFNGPLRIMAENRLHKSNLDSLT
USA300_FPR3757 VHNIIFNGPLRIMAENRLHKSNLDSLT
***************************