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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL2538 [new locus tag: SACOL_RS13295 ]
- pan locus tag?: SAUPAN006177000
- symbol: SACOL2538
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL2538 [new locus tag: SACOL_RS13295 ]
- symbol: SACOL2538
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2599117..2599848
- length: 732
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3238306 NCBI
- RefSeq: YP_187331 NCBI
- BioCyc: see SACOL_RS13295
- MicrobesOnline: 914010 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721GTGTCCACTTTGAAATTAGAATTTAAAAAAAGTATTTCCAATAAAATTATTTACACGCTT
GTTGTGCTATTCACATTCCTTTTCTTACTTGGGTATTTTTTACCAATAGGTATAGACAAA
GTTAAAAGTTTAAGCTATAGCCAGTTTTTCTTCAGTTCATATACTGTTGCAACGCAATTA
GGGTTCTTACTATTTTCATTTGTTATTGCATATTTTATTAATAAAGAGTATTCGAATAAA
AATATCCTGTTTTATAAATTGATTGGCGATAATATCTTTACCTTCTTCTATAAAAAGGTA
GCAGTGTTATTTTTTGAATGTTTAGTGTTCATAATTCTAAGTATCACTATTATTTCAATT
ATATATTCGGATTTCTCACATTACTTACTATTAATAATCTTATTTTCACTCGTTATCTTA
CAATATATCTTAGTTGTTGGAACGATTAGTATGGTTTCACCTAACATTTTAATCAGCTTA
GGTATCAGCATTGTATATTGGATTGGTTCAGTCATCTTAGTTGCCATTAATAAAAATATA
TTTGGTATCGTTGCTCCATTTGAGGCGAGCAATACGATGTATCGTGCCGTAGAAAAAATA
TTGAATAACGAGTCAACATTTATGTGTCCTACTGAAATTATAAATATAGTATCATTCTTC
GTTCTTCTATTTATAGTTAATACTATTGTCTTATTACTAAGTAGAAAGAGATGGTTGAAA
ATCGGTATGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL2538 [new locus tag: SACOL_RS13295 ]
- symbol: SACOL2538
- description: hypothetical protein
- length: 243
- theoretical pI: 9.74211
- theoretical MW: 27924.5
- GRAVY: 1.10535
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010579
- TAT(Tat/SPI): 0.00022
- LIPO(Sec/SPII): 0.006103
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQLGFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISIIYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNIFGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVSFFVLLFIVNTIVLLLSRKRWLKIGM
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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