PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006177000
• symbol^?: —
• synonym:
• description^?: peptide ABC transporter permease

  descriptions from strain specific annotations:

  • peptide ABC transporter permease
  • ABC-2 transporter family protein
  • Antibiotic transport system permease
• strand^?: +
• coordinates^?: 6244377..6245108
• synteny block^?: BlockID0049020
• occurrence^?: in 79% of 33 strains

⊟Orthologs

COL:
SACOL2538
N315:
SA2315
NCTC8325:
SAOUHSC_02833
Newman:
NWMN_2425
USA300_FPR3757:
SAUSA300_2466
04-02981:
SA2981_2463
08BA02176:
—
11819-97:
MS7_2533
6850:
RSAU_002368
71193:
—
ECT-R 2:
ECTR2_2379
ED133:
—
ED98:
SAAV_2592
HO 5096 0412:
SAEMRSA15_24260
JH1:
SaurJH1_2602
JH9:
SaurJH9_2550
JKD6008:
SAA6008_02565
JKD6159:
SAA6159_02423
LGA251:
SARLGA251_23020
M013:
M013TW_2499
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS2413
Mu3:
SAHV_2511
Mu50:
SAV2527
MW2:
MW2447
RF122:
SAB2401
ST398:
—
T0131:
SAT0131_02730
TCH60:
—
TW20:
SATW20_26480
USA300_TCH1516:
USA300HOU_2516
VC40:
SAVC_11510

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQL
  N315            ---MKLEFKKSISNKIIYTLGVLFIFLFLLGYFLPIGIDKVKNLSYGQFFFSSYTVATEF
  NCTC8325        MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQL
  Newman          MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQL
  USA300_FPR3757  MSTLKLEFKKSISNKIIYTLVVLFTFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQL
                     :**************** *** *****************.***.***********::
  
  COL             GFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISI
  N315            GFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFIECLIYIILGITIISI
  NCTC8325        GFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISI
  Newman          GFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISI
  USA300_FPR3757  GFLLFSFVIAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISI
                  ********************************************:***::***.******
  
  COL             IYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNI
  N315            IYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNI
  NCTC8325        IYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNI
  Newman          IYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNI
  USA300_FPR3757  IYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNI
                  ************************************************************
  
  COL             FGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVSFFVLLFIVNTIVLLLSRKRWLK
  N315            FGIVAPFEASNTMYRAVEKILNNESTFICPTEIINTVSFFVLLFIVNTIVLLLSRKRWLK
  NCTC8325        FGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVSFFVLLFIVNTIVLLLSRKRWLK
  Newman          FGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVSFFVLLFIVNTIVLLLSRKRWLK
  USA300_FPR3757  FGIVAPFEASNTMYRAVEKILNNESTFMCPTEIINIVSFFVLLFIVNTIVLLLSRKRWLK
                  ***************************:******* ************************
  
  COL             IGM
  N315            IGM
  NCTC8325        IGM
  Newman          IGM
  USA300_FPR3757  IGM
                  ***