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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01435 [old locus tag: SACOL0283 ]
  • pan locus tag?: SAUPAN001210000
  • symbol: SACOL_RS01435
  • pan gene symbol?: —
  • synonym:
  • product: DUF5079 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01435 [old locus tag: SACOL0283 ]
  • symbol: SACOL_RS01435
  • product: DUF5079 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 324037..324720
  • length: 684
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (324037..324720) NCBI
  • BioCyc: SACOL_RS01435 BioCyc
  • MicrobesOnline: see SACOL0283

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACTACTAAAGAAAATATTGATACTCTTCGAAAGCCAGGCGCACAAGCCTTAAGTTTA
    ATATCATTGTTTTTGATACTTTTTTCATGTTTGACTTTCTTTTTTGGTTTAGATTATGAA
    AGGTTTCCAAATTATTTAAAGATAACGACAATTATAGAATTAATAATTATTGTAATTAGT
    TTACTTCAATGGATTAGATTTATAGATTTCGAAAAAGAAAGTGCACAGAAATATAAAAAA
    ATATATGCTCGATTTTTAGTTGTTATAAATGTGTTAACTACTATCACTGTAGTATTTGCA
    CTGTGTAATCTTTATTATTTTGCAGCTGTACAAAACCATTATGATTTATTTAATTATTGG
    TTGATGGGTTCGATTTCAATCATAATTAGCTATTTATTATTAGTAATTGGCGGAATGTTC
    ACGTTATTAAAATTACCTAAAGTAACAAAACGTTGGGGTGGTAAAACTAAAACACATTTC
    GGTTTATTATTAACTGCGTTGAGCTCATTTATATATATTGAAAAAATTATCGAATATATA
    TTGGTTCCTAATGTCGTAGAATCTAAGTTTATAATTATTGTGAGCATGTTGGTTATCGCT
    GGAGCACAATTTGTGGCATTTCAATTTATTATGCAATACAGTAGATTCTATATTTTTGAA
    TTAAACACTGAAGATGATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    684

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS01435 [old locus tag: SACOL0283 ]
  • symbol: SACOL_RS01435
  • description: DUF5079 domain-containing protein
  • length: 227
  • theoretical pI: 8.88989
  • theoretical MW: 26398.3
  • GRAVY: 0.717621

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0283
  • PFAM:
    no clan defined DUF5079; Domain of unknown function (DUF5079) (PF16882; HMM-score: 313.5)
    and 3 more
    H_PPase; Inorganic H+ pyrophosphatase (PF03030; HMM-score: 8.9)
    DUF996; Protein of unknown function (DUF996) (PF06195; HMM-score: 8.8)
    TPR (CL0020) HAT; HAT (Half-A-TPR) repeat (PF02184; HMM-score: 6.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 29 aa
    • SP(Sec/SPI): 0.002322
    • TAT(Tat/SPI): 0.000272
    • LIPO(Sec/SPII): 0.506073
    • Cleavage Site: CS pos: 29-30. LFS-CL. Pr: 0.4962
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTKENIDTLRKPGAQALSLISLFLILFSCLTFFFGLDYERFPNYLKITTIIELIIIVISLLQWIRFIDFEKESAQKYKKIYARFLVVINVLTTITVVFALCNLYYFAAVQNHYDLFNYWLMGSISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSSFIYIEKIIEYILVPNVVESKFIIIVSMLVIAGAQFVAFQFIMQYSRFYIFELNTEDDD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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