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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01870 [old locus tag: SACOL0372 ]
  • pan locus tag?: SAUPAN001829000
  • symbol: SACOL_RS01870
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01870 [old locus tag: SACOL0372 ]
  • symbol: SACOL_RS01870
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 379452..379784
  • length: 333
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (379452..379784) NCBI
  • BioCyc: SACOL_RS01870 BioCyc
  • MicrobesOnline: see SACOL0372

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGGAATTTAATGAATTTAAAGATCGCGCGTATTTTTTTCAATATATAAACAAAGGACCA
    TATCCAGATGAAGAGGAAAAAATGAAATTGTATAGTTGCTTTTGTAAAATTTATAATCCT
    TCTATGAAAGATAGAGAAATTTTAAAAGCGACTGAATCAAAATCAGGATTAACCATAATT
    GTCAGGTCTTCTAAAACTGAATATCTACCACAAACAAATCACTTAGTTAAAATTGACAGT
    GCATTATATTCCGATAAATTATTCAACATTGTAGAAATAAGAATTGATACACCAGATATT
    GGCTATAATACAGTGGTTTTATCAGAAAAATGA
    60
    120
    180
    240
    300
    333

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS01870 [old locus tag: SACOL0372 ]
  • symbol: SACOL_RS01870
  • description: hypothetical protein
  • length: 110
  • theoretical pI: 5.92424
  • theoretical MW: 12936.7
  • GRAVY: -0.52

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0372
  • PFAM:
    no clan defined Phage_H_T_join; Phage head-tail joining protein (PF05521; HMM-score: 18.1)
    and 2 more
    DUF3083; Protein of unknown function (DUF3083) (PF11281; HMM-score: 12.3)
    HTH (CL0123) Homeobox_KN; Homeobox KN domain (PF05920; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011142
    • TAT(Tat/SPI): 0.000448
    • LIPO(Sec/SPII): 0.006233
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEFNEFKDRAYFFQYINKGPYPDEEEKMKLYSCFCKIYNPSMKDREILKATESKSGLTIIVRSSKTEYLPQTNHLVKIDSALYSDKLFNIVEIRIDTPDIGYNTVVLSEK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0372
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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