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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01905 [old locus tag: SACOL0379 ]
  • pan locus tag?:
  • symbol: SACOL_RS01905
  • pan gene symbol?:
  • synonym:
  • product: phage tail tape measure protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01905 [old locus tag: SACOL0379 ]
  • symbol: SACOL_RS01905
  • product: phage tail tape measure protein
  • replicon: chromosome
  • strand: +
  • coordinates: 382423..388623
  • length: 6201
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002951 (382423..388623) NCBI
  • BioCyc: G1G4B-392 BioCyc
  • MicrobesOnline: see SACOL0379

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
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    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
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    1981
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    2221
    2281
    2341
    2401
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    2581
    2641
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    2941
    3001
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    3121
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    3241
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    3541
    3601
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    3721
    3781
    3841
    3901
    3961
    4021
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    4201
    4261
    4321
    4381
    4441
    4501
    4561
    4621
    4681
    4741
    4801
    4861
    4921
    4981
    5041
    5101
    5161
    5221
    5281
    5341
    5401
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    5521
    5581
    5641
    5701
    5761
    5821
    5881
    5941
    6001
    6061
    6121
    6181
    ATGAATGAAAAAGTAGAAGGCATGACCTTGGAGCTGAAATTAGACCATTTAGGTGTCCAA
    GAAGGCATGAAAGGTTTAAAGCGACAATTAGGTGTTGTTAATAGTGAAATGAAAGCTAAT
    CTGTCAGCATTTGATAAGTCTGAAAAATCAATGGAAAAATATCAGGCGAGAATTAAGGGG
    TTAAATGATAGGCTTAAAGTTCAAAAAAAGATGTATTCTCAAGTAGAAGATGAGCTTAAA
    CAAGTTAACGCTAATTACCAAAAAGCTAAATCCAGTGTAAAAGATGTTGAGAAAGCATAT
    TTAAAGTTAGTAGAAGCCAATAAAAAAGAAAAATTAGCTCTTGATAAATCTAAAGAAGCC
    TTAAAATCATCGAATACAGAACTTAAAAAAGCTGAAAATCAATATAAACGTACAAATCAA
    CGTAAACAAGATGCGTATCAAAAACTTAAACAGTTGAGAGATGCAGAACAAAAGCTTAAG
    AATAGTAACCAAGCTACTACTGCACAACTAAAAAGAGCAAGTGACGCAGTACAGAAGCAG
    TCCGCTAAGCATAAAGCACTTGTTGAACAATATAAACAAGAAGGCAATCAAGTTCAAAAA
    CTAAAAGTGCAAAATGACAATCTTTCAAAATCAAATGATAAAATTGAAAGTTCTTACGCT
    AAAACTAATACTAAATTAAAGCAAACAGAAAAAGAATTTAATGATTTAAACAATACTATT
    AAGAATCATAGCGCTAATGTCGCAAAAGCTGAAACAGCTGTTAATAAAGAAAAAGCTGCT
    TTAAATAATTTGGAGCGTTCAATAGATAAAGCTTCATCCGAAATGAAGACTTTTAACAAA
    GAACAAATGATAGCTCAAAGTCATTTCGGTAAACTTGCAAGTCAAGCGGATGTCATGTCA
    AAGAAATTTAGTTCTATTGGAGACAAAATGACTTCCCTGGGACGTACAATGACGATGGGC
    GTATCTACACCAATTACTTTAGGGTTAGGTGCAGCATTAAAAACAAGTGCAGACTTTGAA
    GGCCAAATGTCTCGAGTTGGAGCGATTGCGCAAGCAAGCAGTAAAGACTTGAAAAGCATG
    TCTAATCAAGCAGTTGACTTAGGAGCTAAAACCAGTAAAAGTGCTAACGAAGTTGCTAAA
    GGTATGGAAGAATTGGCAGCTTTAGGCTTTAATGCCAAACAAACAATGGAGGCTATGCCA
    GGTGTTATCAGTGCAGCAGAAGCAAGTGGTGCAGAAATGGCTACAACTGCAACTGTAATG
    GCTTCAGCGATTAACTCTTTCGGTTTAAAAGCATCTGATGCAAATCATGTTGCTGATTTA
    CTTGCGAGATCAGCAAATGATAGTGCTGCAGATATTCAGTACATGGGAGATGCATTGAAG
    TATGCTGGTACTCCTGCAAAAGCATTAGGAGTTTCAATAGAGGACACTTCCGCAGCAATT
    GAAGTTTTATCTAACTCAGGTTTAGAGGGTTCTCAAGCAGGTACTGCCCTAAGAGCTTCA
    TTTATCAGGCTAGCTAATCCAAGTAAAAATACAGCTAAGGAAATGAAAAAATTAGGTATT
    CATTTGTCTGATGCTAAAGGTCAATTTGTTGGCATGGGTGAATTGATTAGACAGTTCCAA
    GATAATATGAAAGGCATGACGAGAGAACAAAAACTAGCTACAGTGGCTACAATAGTTGGT
    ACTGAAGCAGCAAGTGGATTTTTAGCCTTGATTGAAGCGGGACCAGATAAAATTAATAGC
    TATAGTAAATCCTTAAAGAATTCCAATGGCGAAAGTAAAAAAGCAGCAGATTTGATGAAA
    GATAATCTCAAAGGCGCTCTGGAACAATTAGGTGGCGCTTTTGAATCATTAGCAATCGAA
    GTCGGTAAAGATTTAACGCCTATGATTAGAGCAGGAGCGGAAGGTTTAACAAAATTAGTT
    GATGGATTTACACATCTCCCTGGTTGGGTTAGAAAAGCTTCAGTAGGATTAGCACTTTTT
    GGTGCAGCAATTGGACCTGCAGTTCTTGCTGGAGGGTTATTAATACGTACAGTTGGAAGT
    GCTGCTAAAGGATATGCGTCATTAAATAGACGTATTGCTGAAAATACAATCCTTTCAAAT
    ACTAATTCAAAAGCAATGAAATCTTTAGGTCTTCAAACATTATTTCTTGGTTCTACAACA
    GGAAAAACGTCAAAAGGCTTTAAAGGGTTAGCCGGAGCTATGATGTTTAATTTAAAACCT
    ATAAATGTTTTGAAAAATTCTGCAAAGCTAGCAATTTTACCGTTCAAACTTTTGAAAAAC
    GGTTTAGGATTAGCTGCAAAATCTTTATTTGCAGTAAGTGGAGGCGCAAGATTTGCGGGT
    GTAGCCTTAAGGTTTTTAACAGGACCTATAGGTGCTACAATAACTGCTATTACAATTGCG
    TATAAAGTTTTTAAAACCGCATATGATCGTGTGGAATGGTTCAGAAACGGTATTAACGGT
    TTAGGAGAAACTATAAAGTTTTTTGGTGGTAAAATTATTGGCGGCGCTGTTAGAAAGCTA
    GGAGAGTTTAAAAACTATCTTGGAAGTATCGGCAAAAGCTTCAAAGAAAAGTTTTCAAAA
    GATATGAAAGATGGTTATAAATCATTAAGCGACGATGACCTTCTCAAAGTAGGAGTCAAC
    AAGTTTAAAGGATTTATGCAAACCATGGGCACAGCTTCTAAAAAAGCGTCTGATACTGTA
    AAAGTGTTAGGGAAAGGTGTTTCAAAAGAAACAGAAAAAGCTTTAGAAAAATATGTGCAT
    TATTCTGAAGAAAATAGCAGAATCATGGAAAAAGTACGTTTAAACTCGGGTCAGATATCA
    GAAGACAAAGCAAAAAAACTTTTGAAAATTGAAACGGATTTATCTAATAACCTTATAGCT
    GAAATAGAAAAAAGAAATAAAAAGGAACTCGAAAAAACTCAAGAACTTATTGATAAGTAT
    AGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGAC
    TTGCGAATTAAAAAAGAGCAAGAACTCAATCAGAAAATCAAAGAATTGAAAGAAAAAGCT
    TTGAGTGATGGTCAGATTTCAGAAAATGAAAGAAAAGAAATTGAAAAGCTTGAAAATCAA
    AGACGTGATATCACTGTTAAAGAATTGAGTAAGACTGAAAAAGAGCAAGAGCGTATTTTA
    GTAAGAATGCAAAGAAACAGAAATGCTTATTCAATAGACGAAGCGAGCAAAGCAATTAAA
    GAAGCAGAAAAAGCAAGAAAAGCAAGAAAAAAAGAAGTGGACAAGCAATATGAAGATGAT
    GTCATTGCTATAAAAAATAACGTCAACCTTTCTAAGTCTGAAAAAGATAAATTGTTAGCT
    ATTGCTGATCAAAGACATAAGGATGAAGTAAGAAAGGCAAAATCTAAAAAAGATGCTGTA
    GTAGACGTTGTTAAAAAGCAAAATAAAGATATTGATAAAGAAATGGATTTATCCAGTGGA
    CGTGTATATAAAAATACTGAAAAGTGGTGGAATGGTCTTAAAAGTTGGTGGTCTAACTTT
    AGAGAAGACCAAAAGAAGAAAAGTGATAAATACGCTAAAGAACAAGAAGAAACAGCTCGT
    AGAAACAGAGAAAATATAAAGAAATGGTTTGGAAATGCTTGGGACGGCGTAAAAACTAAA
    ACTGGTGAAGCCTTTAGTAAAATGGGCAGAAATGCTAATCATTTTGGCGGCGAAATGAAA
    AAAATGTGGAGTGGAATCAAAGGAATTCCAAGCAAATTAAGTTCAAGTTGGAGCTCAGCC
    AAAAGTTCTGTAGGATATCACACTAAGGCTATAGCTAATAGTACTGGTAAATGGTTTGGA
    AAAGCTTGGCAATCTGTTAAATCGACAACAGGAAGTATTTACAATCAAACTAAGCAAAAG
    TATTCAGATGCCTCAGATAAAGCTTGGGCGCATTCAAAATCTATTTGGAAAGGGACATCA
    AAATGGTTTAGCAATGCATATAAAAGTGCAAAGGGCTGGCTAACGGATATGGCTAATAAA
    TCGCGCTCGAAATGGGATAATATTTCTAGTACAGCATGGTCGAATGCAAAATCCGTTTGG
    AAAGGCACATCGAAATGGTTTGGTAACTCATACAAATCTTTAAAAGGTTGGACTGGGGAT
    ATGTATTCAAGAGCCCACGATCGTTTTGATGCAATTTCAAGTTCGGCATGGTCTAACGCT
    AAATCAGTATTTAATGGTTTTAGAAAATGGCTATCAAAAACATATGATTGGATTAGAGAT
    ATTGGTAAAGACATGGGAAGAGCTGCGGCTGATTTAGGTAAAAATGTTGCTAATAAAGCT
    ATTGGCGGTTTGAATAGCATGATTGGCGGTATTAATAAAATATCTAAAGCCATTACTGAT
    AAAAATCTCATCAAGCCAATACCTACATTGTCTACTGGTACTTTAGCAGGAAAGGGTGTA
    GCTACCGATAATTCGGGAGCATTAACGCAACCGACATTTGCTGTATTAAATGATAGAGGT
    TCTGGAAACGCTCCAGGCGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTC
    CATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGAGATAGTGTAATAAAT
    GCCAATGACACTCTGAAGTTACAGCGGATGGGTGTTTTGCCAAAATTCCATGGTGGTACG
    AAAAAGAAAAAATGGATGGAACAAGTTACTGAAAATCTTGGTAAAAAAGCAGGGGACTTC
    GGTTCTAAAGCTAAAAACACAGCTCATAATATCAAAAAAGGTGCAGAAGAAATGGTTGAA
    GCCGCAGGCGATAAAATCAAAGATGGTGCATCTTGGTTAGGCGATAAAATCGGCGATGTG
    TGGGATTATGTACAACATCCAGGGAAACTAGTAAATAAAGTAATGTCAGGTTTAAATATT
    AATTTTGGAGGCGGAGCTAACGCTACAGTAAAAATTGCTAAAGGCGCGTACTCATTGCTC
    AAAAAGAAATTAGTAGACAAAGTAAAATCGTGGTTTGAAGATTTTGGTGGCGGAGGCGAT
    GGAAGCTATCTATTTGACCATCCAATTTGGCAAAGGTTTGGGAGTTACACAGGTGGACTT
    AACTTTAATGGCGGTCGTCACTATGGTATCGACTTTGGTATGCCTACAGGAACGAACATT
    TATGCTGTTAAAGGCGGTATAGCTGATAAAGTATGGACTGATTACGGTGGCGGTAATTCT
    ATACAAATTAAGACCGGTGCTAACGAATGGAACTGGTATATGCATTTATCTAAGCAATTA
    GCAAGACAAGGCCAACGTATTAAAGCTGGTCAACTGATAGGGAAATCAGGTGCTACAGGT
    AATTTCGTTAGAGGAGCACACTTACATTTCCAATTGATGCAAGGGTCGCATCCAGGGAAT
    GATACAGCTAAAGATCCAGAAAAATGGTTGAAGTCACTTAAAGGTAGTGGCGTTCGAAGT
    GGTTCAGGTGTTAATAAGGCTGCATCTGCTTGGGCAGGCGATATACGTCGTGCAGCAAAA
    CGAATGGGGGTTAATGTTACTTCGGGTGACGTAGGAAATATCATTAGCTTGATTCAACAC
    GAATCAGGAGGAAATGCAGGTATAACTCAATCTAGTTCGCTTAGAGACATCAACGTTTTA
    CAGGGCAATCCAGCAAAAGGATTGCTTCAATATATCCCACAAACATTTAGACATTATGCT
    GTTAGAGGTCACAACAATATATATAGTGGTTACGATCAGTTATTAGCGTTCTTTAACAAC
    AGATATTGGCGCTCACAGTTTAACCCAAGAGGTGGTTGGTCTCCAAGTGGTCCAAGAAGA
    TATGCGAATGGTGGTTTGATTACAAAGCATCAACTTGCTGAAGTGGGTGAAGGAGATAAA
    CAGGAGATGGTTATCCCTTTAACTAGACGTAAACGAGCAATTCAATTAACTGAACAGGTT
    ATGCGCATCATCGGTATGGATGGCAAGCCAAATAACATCACTGTAAATAATGATACTTCA
    ACAGTTGAAAAATTGTTGAAACAAATTGTTATGTTAAGTGATAAAGGAAATAAATTAACA
    GATGCATTGATTCAAACTGTTTCTTCTCAGGATAATAACTTAGGTTCTAATGATGCAATT
    AGAGGTTTAGAAAAAATATTGTCAAAACAAAGTGGGCATAGAGCAAATGCAAATAATTAT
    ATGGGAGGTTTGACTAATTAA
    60
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    6180
    6201

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS01905 [old locus tag: SACOL0379 ]
  • symbol: SACOL_RS01905
  • description: phage tail tape measure protein
  • length: 2066
  • theoretical pI: 10.5037
  • theoretical MW: 226040
  • GRAVY: -0.61181

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 367.5)
    and 4 more
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 49.5)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 49.5)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 41.7)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 41.7)
  • TheSEED: see SACOL0379
  • PFAM:
    no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 162.3)
    and 1 more
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 75)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.02
    • Extracellular Score: 9.98
    • Internal Helices: 2
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005056
    • TAT(Tat/SPI): 0.0011
    • LIPO(Sec/SPII): 0.000981
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNEKVEGMTLELKLDHLGVQEGMKGLKRQLGVVNSEMKANLSAFDKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDELKQVNANYQKAKSSVKDVEKAYLKLVEANKKEKLALDKSKEALKSSNTELKKAENQYKRTNQRKQDAYQKLKQLRDAEQKLKNSNQATTAQLKRASDAVQKQSAKHKALVEQYKQEGNQVQKLKVQNDNLSKSNDKIESSYAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMKTFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALKTSADFEGQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAALGFNAKQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDSAADIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSGLEGSQAGTALRASFIRLANPSKNTAKEMKKLGIHLSDAKGQFVGMGELIRQFQDNMKGMTREQKLATVATIVGTEAASGFLALIEAGPDKINSYSKSLKNSNGESKKAADLMKDNLKGALEQLGGAFESLAIEVGKDLTPMIRAGAEGLTKLVDGFTHLPGWVRKASVGLALFGAAIGPAVLAGGLLIRTVGSAAKGYASLNRRIAENTILSNTNSKAMKSLGLQTLFLGSTTGKTSKGFKGLAGAMMFNLKPINVLKNSAKLAILPFKLLKNGLGLAAKSLFAVSGGARFAGVALRFLTGPIGATITAITIAYKVFKTAYDRVEWFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKEKFSKDMKDGYKSLSDDDLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETEKALEKYVHYSEENSRIMEKVRLNSGQISEDKAKKLLKIETDLSNNLIAEIEKRNKKELEKTQELIDKYSAFDEQEKQNILTRTKEKNDLRIKKEQELNQKIKELKEKALSDGQISENERKEIEKLENQRRDITVKELSKTEKEQERILVRMQRNRNAYSIDEASKAIKEAEKARKARKKEVDKQYEDDVIAIKNNVNLSKSEKDKLLAIADQRHKDEVRKAKSKKDAVVDVVKKQNKDIDKEMDLSSGRVYKNTEKWWNGLKSWWSNFREDQKKKSDKYAKEQEETARRNRENIKKWFGNAWDGVKTKTGEAFSKMGRNANHFGGEMKKMWSGIKGIPSKLSSSWSSAKSSVGYHTKAIANSTGKWFGKAWQSVKSTTGSIYNQTKQKYSDASDKAWAHSKSIWKGTSKWFSNAYKSAKGWLTDMANKSRSKWDNISSTAWSNAKSVWKGTSKWFGNSYKSLKGWTGDMYSRAHDRFDAISSSAWSNAKSVFNGFRKWLSKTYDWIRDIGKDMGRAAADLGKNVANKAIGGLNSMIGGINKISKAITDKNLIKPIPTLSTGTLAGKGVATDNSGALTQPTFAVLNDRGSGNAPGGGVQEVIHRADGTFHAPQGRDVVVPLGVGDSVINANDTLKLQRMGVLPKFHGGTKKKKWMEQVTENLGKKAGDFGSKAKNTAHNIKKGAEEMVEAAGDKIKDGASWLGDKIGDVWDYVQHPGKLVNKVMSGLNINFGGGANATVKIAKGAYSLLKKKLVDKVKSWFEDFGGGGDGSYLFDHPIWQRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRSGSGVNKAASAWAGDIRRAAKRMGVNVTSGDVGNIISLIQHESGGNAGITQSSSLRDINVLQGNPAKGLLQYIPQTFRHYAVRGHNNIYSGYDQLLAFFNNRYWRSQFNPRGGWSPSGPRRYANGGLITKHQLAEVGEGDKQEMVIPLTRRKRAIQLTEQVMRIIGMDGKPNNITVNNDTSTVEKLLKQIVMLSDKGNKLTDALIQTVSSQDNNLGSNDAIRGLEKILSKQSGHRANANNYMGGLTN

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: see SACOL0379
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]