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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0379 [new locus tag: SACOL_RS01905 ]
- pan locus tag?:
- symbol: SACOL0379
- pan gene symbol?: —
- synonym:
- product: prophage L54a, TP901 family tail tape meausure protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0379 [new locus tag: SACOL_RS01905 ]
- symbol: SACOL0379
- product: prophage L54a, TP901 family tail tape meausure protein
- replicon: chromosome
- strand: +
- coordinates: 382423..388623
- length: 6201
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3236652 NCBI
- RefSeq: YP_185271 NCBI
- BioCyc: see SACOL_RS01905
- MicrobesOnline: 911850 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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6181ATGAATGAAAAAGTAGAAGGCATGACCTTGGAGCTGAAATTAGACCATTTAGGTGTCCAA
GAAGGCATGAAAGGTTTAAAGCGACAATTAGGTGTTGTTAATAGTGAAATGAAAGCTAAT
CTGTCAGCATTTGATAAGTCTGAAAAATCAATGGAAAAATATCAGGCGAGAATTAAGGGG
TTAAATGATAGGCTTAAAGTTCAAAAAAAGATGTATTCTCAAGTAGAAGATGAGCTTAAA
CAAGTTAACGCTAATTACCAAAAAGCTAAATCCAGTGTAAAAGATGTTGAGAAAGCATAT
TTAAAGTTAGTAGAAGCCAATAAAAAAGAAAAATTAGCTCTTGATAAATCTAAAGAAGCC
TTAAAATCATCGAATACAGAACTTAAAAAAGCTGAAAATCAATATAAACGTACAAATCAA
CGTAAACAAGATGCGTATCAAAAACTTAAACAGTTGAGAGATGCAGAACAAAAGCTTAAG
AATAGTAACCAAGCTACTACTGCACAACTAAAAAGAGCAAGTGACGCAGTACAGAAGCAG
TCCGCTAAGCATAAAGCACTTGTTGAACAATATAAACAAGAAGGCAATCAAGTTCAAAAA
CTAAAAGTGCAAAATGACAATCTTTCAAAATCAAATGATAAAATTGAAAGTTCTTACGCT
AAAACTAATACTAAATTAAAGCAAACAGAAAAAGAATTTAATGATTTAAACAATACTATT
AAGAATCATAGCGCTAATGTCGCAAAAGCTGAAACAGCTGTTAATAAAGAAAAAGCTGCT
TTAAATAATTTGGAGCGTTCAATAGATAAAGCTTCATCCGAAATGAAGACTTTTAACAAA
GAACAAATGATAGCTCAAAGTCATTTCGGTAAACTTGCAAGTCAAGCGGATGTCATGTCA
AAGAAATTTAGTTCTATTGGAGACAAAATGACTTCCCTGGGACGTACAATGACGATGGGC
GTATCTACACCAATTACTTTAGGGTTAGGTGCAGCATTAAAAACAAGTGCAGACTTTGAA
GGCCAAATGTCTCGAGTTGGAGCGATTGCGCAAGCAAGCAGTAAAGACTTGAAAAGCATG
TCTAATCAAGCAGTTGACTTAGGAGCTAAAACCAGTAAAAGTGCTAACGAAGTTGCTAAA
GGTATGGAAGAATTGGCAGCTTTAGGCTTTAATGCCAAACAAACAATGGAGGCTATGCCA
GGTGTTATCAGTGCAGCAGAAGCAAGTGGTGCAGAAATGGCTACAACTGCAACTGTAATG
GCTTCAGCGATTAACTCTTTCGGTTTAAAAGCATCTGATGCAAATCATGTTGCTGATTTA
CTTGCGAGATCAGCAAATGATAGTGCTGCAGATATTCAGTACATGGGAGATGCATTGAAG
TATGCTGGTACTCCTGCAAAAGCATTAGGAGTTTCAATAGAGGACACTTCCGCAGCAATT
GAAGTTTTATCTAACTCAGGTTTAGAGGGTTCTCAAGCAGGTACTGCCCTAAGAGCTTCA
TTTATCAGGCTAGCTAATCCAAGTAAAAATACAGCTAAGGAAATGAAAAAATTAGGTATT
CATTTGTCTGATGCTAAAGGTCAATTTGTTGGCATGGGTGAATTGATTAGACAGTTCCAA
GATAATATGAAAGGCATGACGAGAGAACAAAAACTAGCTACAGTGGCTACAATAGTTGGT
ACTGAAGCAGCAAGTGGATTTTTAGCCTTGATTGAAGCGGGACCAGATAAAATTAATAGC
TATAGTAAATCCTTAAAGAATTCCAATGGCGAAAGTAAAAAAGCAGCAGATTTGATGAAA
GATAATCTCAAAGGCGCTCTGGAACAATTAGGTGGCGCTTTTGAATCATTAGCAATCGAA
GTCGGTAAAGATTTAACGCCTATGATTAGAGCAGGAGCGGAAGGTTTAACAAAATTAGTT
GATGGATTTACACATCTCCCTGGTTGGGTTAGAAAAGCTTCAGTAGGATTAGCACTTTTT
GGTGCAGCAATTGGACCTGCAGTTCTTGCTGGAGGGTTATTAATACGTACAGTTGGAAGT
GCTGCTAAAGGATATGCGTCATTAAATAGACGTATTGCTGAAAATACAATCCTTTCAAAT
ACTAATTCAAAAGCAATGAAATCTTTAGGTCTTCAAACATTATTTCTTGGTTCTACAACA
GGAAAAACGTCAAAAGGCTTTAAAGGGTTAGCCGGAGCTATGATGTTTAATTTAAAACCT
ATAAATGTTTTGAAAAATTCTGCAAAGCTAGCAATTTTACCGTTCAAACTTTTGAAAAAC
GGTTTAGGATTAGCTGCAAAATCTTTATTTGCAGTAAGTGGAGGCGCAAGATTTGCGGGT
GTAGCCTTAAGGTTTTTAACAGGACCTATAGGTGCTACAATAACTGCTATTACAATTGCG
TATAAAGTTTTTAAAACCGCATATGATCGTGTGGAATGGTTCAGAAACGGTATTAACGGT
TTAGGAGAAACTATAAAGTTTTTTGGTGGTAAAATTATTGGCGGCGCTGTTAGAAAGCTA
GGAGAGTTTAAAAACTATCTTGGAAGTATCGGCAAAAGCTTCAAAGAAAAGTTTTCAAAA
GATATGAAAGATGGTTATAAATCATTAAGCGACGATGACCTTCTCAAAGTAGGAGTCAAC
AAGTTTAAAGGATTTATGCAAACCATGGGCACAGCTTCTAAAAAAGCGTCTGATACTGTA
AAAGTGTTAGGGAAAGGTGTTTCAAAAGAAACAGAAAAAGCTTTAGAAAAATATGTGCAT
TATTCTGAAGAAAATAGCAGAATCATGGAAAAAGTACGTTTAAACTCGGGTCAGATATCA
GAAGACAAAGCAAAAAAACTTTTGAAAATTGAAACGGATTTATCTAATAACCTTATAGCT
GAAATAGAAAAAAGAAATAAAAAGGAACTCGAAAAAACTCAAGAACTTATTGATAAGTAT
AGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGAC
TTGCGAATTAAAAAAGAGCAAGAACTCAATCAGAAAATCAAAGAATTGAAAGAAAAAGCT
TTGAGTGATGGTCAGATTTCAGAAAATGAAAGAAAAGAAATTGAAAAGCTTGAAAATCAA
AGACGTGATATCACTGTTAAAGAATTGAGTAAGACTGAAAAAGAGCAAGAGCGTATTTTA
GTAAGAATGCAAAGAAACAGAAATGCTTATTCAATAGACGAAGCGAGCAAAGCAATTAAA
GAAGCAGAAAAAGCAAGAAAAGCAAGAAAAAAAGAAGTGGACAAGCAATATGAAGATGAT
GTCATTGCTATAAAAAATAACGTCAACCTTTCTAAGTCTGAAAAAGATAAATTGTTAGCT
ATTGCTGATCAAAGACATAAGGATGAAGTAAGAAAGGCAAAATCTAAAAAAGATGCTGTA
GTAGACGTTGTTAAAAAGCAAAATAAAGATATTGATAAAGAAATGGATTTATCCAGTGGA
CGTGTATATAAAAATACTGAAAAGTGGTGGAATGGTCTTAAAAGTTGGTGGTCTAACTTT
AGAGAAGACCAAAAGAAGAAAAGTGATAAATACGCTAAAGAACAAGAAGAAACAGCTCGT
AGAAACAGAGAAAATATAAAGAAATGGTTTGGAAATGCTTGGGACGGCGTAAAAACTAAA
ACTGGTGAAGCCTTTAGTAAAATGGGCAGAAATGCTAATCATTTTGGCGGCGAAATGAAA
AAAATGTGGAGTGGAATCAAAGGAATTCCAAGCAAATTAAGTTCAAGTTGGAGCTCAGCC
AAAAGTTCTGTAGGATATCACACTAAGGCTATAGCTAATAGTACTGGTAAATGGTTTGGA
AAAGCTTGGCAATCTGTTAAATCGACAACAGGAAGTATTTACAATCAAACTAAGCAAAAG
TATTCAGATGCCTCAGATAAAGCTTGGGCGCATTCAAAATCTATTTGGAAAGGGACATCA
AAATGGTTTAGCAATGCATATAAAAGTGCAAAGGGCTGGCTAACGGATATGGCTAATAAA
TCGCGCTCGAAATGGGATAATATTTCTAGTACAGCATGGTCGAATGCAAAATCCGTTTGG
AAAGGCACATCGAAATGGTTTGGTAACTCATACAAATCTTTAAAAGGTTGGACTGGGGAT
ATGTATTCAAGAGCCCACGATCGTTTTGATGCAATTTCAAGTTCGGCATGGTCTAACGCT
AAATCAGTATTTAATGGTTTTAGAAAATGGCTATCAAAAACATATGATTGGATTAGAGAT
ATTGGTAAAGACATGGGAAGAGCTGCGGCTGATTTAGGTAAAAATGTTGCTAATAAAGCT
ATTGGCGGTTTGAATAGCATGATTGGCGGTATTAATAAAATATCTAAAGCCATTACTGAT
AAAAATCTCATCAAGCCAATACCTACATTGTCTACTGGTACTTTAGCAGGAAAGGGTGTA
GCTACCGATAATTCGGGAGCATTAACGCAACCGACATTTGCTGTATTAAATGATAGAGGT
TCTGGAAACGCTCCAGGCGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTC
CATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGAGATAGTGTAATAAAT
GCCAATGACACTCTGAAGTTACAGCGGATGGGTGTTTTGCCAAAATTCCATGGTGGTACG
AAAAAGAAAAAATGGATGGAACAAGTTACTGAAAATCTTGGTAAAAAAGCAGGGGACTTC
GGTTCTAAAGCTAAAAACACAGCTCATAATATCAAAAAAGGTGCAGAAGAAATGGTTGAA
GCCGCAGGCGATAAAATCAAAGATGGTGCATCTTGGTTAGGCGATAAAATCGGCGATGTG
TGGGATTATGTACAACATCCAGGGAAACTAGTAAATAAAGTAATGTCAGGTTTAAATATT
AATTTTGGAGGCGGAGCTAACGCTACAGTAAAAATTGCTAAAGGCGCGTACTCATTGCTC
AAAAAGAAATTAGTAGACAAAGTAAAATCGTGGTTTGAAGATTTTGGTGGCGGAGGCGAT
GGAAGCTATCTATTTGACCATCCAATTTGGCAAAGGTTTGGGAGTTACACAGGTGGACTT
AACTTTAATGGCGGTCGTCACTATGGTATCGACTTTGGTATGCCTACAGGAACGAACATT
TATGCTGTTAAAGGCGGTATAGCTGATAAAGTATGGACTGATTACGGTGGCGGTAATTCT
ATACAAATTAAGACCGGTGCTAACGAATGGAACTGGTATATGCATTTATCTAAGCAATTA
GCAAGACAAGGCCAACGTATTAAAGCTGGTCAACTGATAGGGAAATCAGGTGCTACAGGT
AATTTCGTTAGAGGAGCACACTTACATTTCCAATTGATGCAAGGGTCGCATCCAGGGAAT
GATACAGCTAAAGATCCAGAAAAATGGTTGAAGTCACTTAAAGGTAGTGGCGTTCGAAGT
GGTTCAGGTGTTAATAAGGCTGCATCTGCTTGGGCAGGCGATATACGTCGTGCAGCAAAA
CGAATGGGGGTTAATGTTACTTCGGGTGACGTAGGAAATATCATTAGCTTGATTCAACAC
GAATCAGGAGGAAATGCAGGTATAACTCAATCTAGTTCGCTTAGAGACATCAACGTTTTA
CAGGGCAATCCAGCAAAAGGATTGCTTCAATATATCCCACAAACATTTAGACATTATGCT
GTTAGAGGTCACAACAATATATATAGTGGTTACGATCAGTTATTAGCGTTCTTTAACAAC
AGATATTGGCGCTCACAGTTTAACCCAAGAGGTGGTTGGTCTCCAAGTGGTCCAAGAAGA
TATGCGAATGGTGGTTTGATTACAAAGCATCAACTTGCTGAAGTGGGTGAAGGAGATAAA
CAGGAGATGGTTATCCCTTTAACTAGACGTAAACGAGCAATTCAATTAACTGAACAGGTT
ATGCGCATCATCGGTATGGATGGCAAGCCAAATAACATCACTGTAAATAATGATACTTCA
ACAGTTGAAAAATTGTTGAAACAAATTGTTATGTTAAGTGATAAAGGAAATAAATTAACA
GATGCATTGATTCAAACTGTTTCTTCTCAGGATAATAACTTAGGTTCTAATGATGCAATT
AGAGGTTTAGAAAAAATATTGTCAAAACAAAGTGGGCATAGAGCAAATGCAAATAATTAT
ATGGGAGGTTTGACTAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0379 [new locus tag: SACOL_RS01905 ]
- symbol: SACOL0379
- description: prophage L54a, TP901 family tail tape meausure protein
- length: 2066
- theoretical pI: 10.5037
- theoretical MW: 226040
- GRAVY: -0.61181
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 367.5)and 4 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 49.5)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 49.5)Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 41.7)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 41.7)
- TheSEED :
- Phage tail length tape-measure protein
- PFAM: no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 162.3)and 1 moreHybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 75)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.02
- Extracellular Score: 9.98
- Internal Helices: 2
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005056
- TAT(Tat/SPI): 0.0011
- LIPO(Sec/SPII): 0.000981
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNEKVEGMTLELKLDHLGVQEGMKGLKRQLGVVNSEMKANLSAFDKSEKSMEKYQARIKGLNDRLKVQKKMYSQVEDELKQVNANYQKAKSSVKDVEKAYLKLVEANKKEKLALDKSKEALKSSNTELKKAENQYKRTNQRKQDAYQKLKQLRDAEQKLKNSNQATTAQLKRASDAVQKQSAKHKALVEQYKQEGNQVQKLKVQNDNLSKSNDKIESSYAKTNTKLKQTEKEFNDLNNTIKNHSANVAKAETAVNKEKAALNNLERSIDKASSEMKTFNKEQMIAQSHFGKLASQADVMSKKFSSIGDKMTSLGRTMTMGVSTPITLGLGAALKTSADFEGQMSRVGAIAQASSKDLKSMSNQAVDLGAKTSKSANEVAKGMEELAALGFNAKQTMEAMPGVISAAEASGAEMATTATVMASAINSFGLKASDANHVADLLARSANDSAADIQYMGDALKYAGTPAKALGVSIEDTSAAIEVLSNSGLEGSQAGTALRASFIRLANPSKNTAKEMKKLGIHLSDAKGQFVGMGELIRQFQDNMKGMTREQKLATVATIVGTEAASGFLALIEAGPDKINSYSKSLKNSNGESKKAADLMKDNLKGALEQLGGAFESLAIEVGKDLTPMIRAGAEGLTKLVDGFTHLPGWVRKASVGLALFGAAIGPAVLAGGLLIRTVGSAAKGYASLNRRIAENTILSNTNSKAMKSLGLQTLFLGSTTGKTSKGFKGLAGAMMFNLKPINVLKNSAKLAILPFKLLKNGLGLAAKSLFAVSGGARFAGVALRFLTGPIGATITAITIAYKVFKTAYDRVEWFRNGINGLGETIKFFGGKIIGGAVRKLGEFKNYLGSIGKSFKEKFSKDMKDGYKSLSDDDLLKVGVNKFKGFMQTMGTASKKASDTVKVLGKGVSKETEKALEKYVHYSEENSRIMEKVRLNSGQISEDKAKKLLKIETDLSNNLIAEIEKRNKKELEKTQELIDKYSAFDEQEKQNILTRTKEKNDLRIKKEQELNQKIKELKEKALSDGQISENERKEIEKLENQRRDITVKELSKTEKEQERILVRMQRNRNAYSIDEASKAIKEAEKARKARKKEVDKQYEDDVIAIKNNVNLSKSEKDKLLAIADQRHKDEVRKAKSKKDAVVDVVKKQNKDIDKEMDLSSGRVYKNTEKWWNGLKSWWSNFREDQKKKSDKYAKEQEETARRNRENIKKWFGNAWDGVKTKTGEAFSKMGRNANHFGGEMKKMWSGIKGIPSKLSSSWSSAKSSVGYHTKAIANSTGKWFGKAWQSVKSTTGSIYNQTKQKYSDASDKAWAHSKSIWKGTSKWFSNAYKSAKGWLTDMANKSRSKWDNISSTAWSNAKSVWKGTSKWFGNSYKSLKGWTGDMYSRAHDRFDAISSSAWSNAKSVFNGFRKWLSKTYDWIRDIGKDMGRAAADLGKNVANKAIGGLNSMIGGINKISKAITDKNLIKPIPTLSTGTLAGKGVATDNSGALTQPTFAVLNDRGSGNAPGGGVQEVIHRADGTFHAPQGRDVVVPLGVGDSVINANDTLKLQRMGVLPKFHGGTKKKKWMEQVTENLGKKAGDFGSKAKNTAHNIKKGAEEMVEAAGDKIKDGASWLGDKIGDVWDYVQHPGKLVNKVMSGLNINFGGGANATVKIAKGAYSLLKKKLVDKVKSWFEDFGGGGDGSYLFDHPIWQRFGSYTGGLNFNGGRHYGIDFGMPTGTNIYAVKGGIADKVWTDYGGGNSIQIKTGANEWNWYMHLSKQLARQGQRIKAGQLIGKSGATGNFVRGAHLHFQLMQGSHPGNDTAKDPEKWLKSLKGSGVRSGSGVNKAASAWAGDIRRAAKRMGVNVTSGDVGNIISLIQHESGGNAGITQSSSLRDINVLQGNPAKGLLQYIPQTFRHYAVRGHNNIYSGYDQLLAFFNNRYWRSQFNPRGGWSPSGPRRYANGGLITKHQLAEVGEGDKQEMVIPLTRRKRAIQLTEQVMRIIGMDGKPNNITVNNDTSTVEKLLKQIVMLSDKGNKLTDALIQTVSSQDNNLGSNDAIRGLEKILSKQSGHRANANNYMGGLTN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: Cytoplasmic [1]
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)